RNA id: TCONS_00003289


Basic Information

Item Value
RNA id TCONS_00003289
length 541
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_000927
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 778575 ~ 779614 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACAGTTCAGAGCACGGACAGACTTCGCTAGCATCACATTGTTATTGCCGAGTGCATTCAAATACAAAACCACTCATATTAAGCTACACTTCAAAGCATTGTGCTGCTCTGCTGTACTTCCAAATCCAAGGACTGTAAACTCTCAACCAGtatctgtttattaaagtgtTCTTCGTCTCTGACCGGACGACTTATGTCTGCTCAATTTCCACCAGCACCCACACTAGTCTACATTACAaatggtccttcgagccggagttaATGAGCTGTCATAAGAATGATGTATCAGAGTGATCCAGAGCCAGCAATCAGACCCAGAAGAGTGGTGCGACTACCTAGTTACCTGGCAGATTTCGAGCTTACTGATCATCAACAGAGTTTACAGTCAGAACAGAGAGCACACACATCCTCAGAGTGGAGTGATGATTCCAGATTGCAAGGAGCTGCTGCATTACCGCTTGTTGACTATGGGGCCAGTATGCAGACAACAGAGCAGTTGATAGAGTGGAGTCCCAGCAATAGAGAGCATGAACAACAACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001475 lncRNA downstream 156396 620990 ~ 622179 (-) False XLOC_000923
TCONS_00001467 lncRNA downstream 264858 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001463 lncRNA downstream 293987 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001454 lncRNA downstream 432680 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 567762 209129 ~ 210813 (-) True XLOC_000912
TCONS_00003290 lncRNA upstream 226323 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002897 lncRNA upstream 364348 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003292 lncRNA upstream 511561 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003291 lncRNA upstream 511561 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003293 lncRNA upstream 511561 1291175 ~ 1315753 (-) False XLOC_000932
TCONS_00001482 mRNA downstream 63949 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001481 mRNA downstream 97459 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001480 mRNA downstream 108858 658405 ~ 669717 (-) True XLOC_000924
TCONS_00001478 mRNA downstream 121882 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001477 mRNA downstream 121882 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001483 mRNA upstream 180595 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA upstream 193853 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001489 mRNA upstream 583318 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001490 mRNA upstream 839380 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001491 mRNA upstream 839539 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001476 other downstream 153495 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 306650 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 624729 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 728740 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 734029 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001485 other upstream 271327 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 533991 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1091247 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1094394 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 1104746 1884360 ~ 1928111 (-) False XLOC_000939

Expression Profile

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