RNA id: TCONS_00002898


Basic Information

Item Value
RNA id TCONS_00002898
length 1561
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id XLOC_000935
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1491941 ~ 1499393 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCAGAAGTGCAGTCTGAAGTTTGTGAGCATGTGGAAATCCAGCTAACGCATCCCTTGATTTGAAAGCTTCAGACATTCTACAACACTGACGTCTGCAGAAGCGTGTCTGAAATCTGACTCCGGGGGGTTTGGATTAATGGCAGCTGGTCCTGAACGCCGATACCACCTAAAGCACTCCGCCCACCACTCCCAAACCTGCCGTCCAAACGGTCCAGAGTGTGTTAGGCATGTGCTGGAGGCGTTCTGCAGGTGTACATCTGCCAATTTGGGGGCCGTCTGGACGCAGATGACACTGATACCGAAGGCACCATGTAAATTTTGACGATCTGCAGCGCCTTTATGGCGTCTGAGACACAGGACTAATTGTGTCCTCTGGAGGAGACGGATTTGCATGCTTTAACTTATGCAGCGTGACTCGCCTCTCTGTCGTACACaaactctgacacacacacacatgcatgactGTTAAACAAGCTCTCACCTACTCGCTCTCACCCCCTCTGcagcattaacacacacacacacactctcacaattGAAACCGACCACTTTATTTCCTCCTTTTCAAGCAAATGCGAACAGGTGGAGGTTTTGAAAACACCGACCCGAACAAAACTAGCAGAACATGTGACCTCAGTGACACTTGGATgctttattttcttcttcttcttctttctttttcaatGCAATGTTTAAGTTGCATGAGAGAGAAGCTTCTGTGGGCCGCCACAACCACAAACCAAGTCTGCGACCGGTCACGGCTCTCTAGAAAACACTGAGATAAAGATAGACAAGAGCGAAGAGAGCAGGAGGAGGGAGGATACGTGTTGATGTCAGCGTGTgaattgacagaaaaaaaacacacacacacacacacacacacaaccacagcgaCCCGTTTTTTGCGCTCCTGCTCTTTTTGCACTAGGGTAAGCATCAGTCAACCACAGGCTGACCGCCGATTGCAATCTCCCGTCAACAATGCACAGAGTCCCAGGACAAAATCGGCTTGCTGGACCGACCCAGGCTGACCGAGGGGTCCCGGCTGTGGGGCAAATCCGGGAGCCCTTCAAAATCCGGGAGCAGATCAAACTGGAAGCGTTGGATTCAGACGAAGACGTGGACAAGCAGACGCTCCCCATGGCCTCCAACAGCATCTTCGAGAGCTTCCAGTCGTACCAGTCTTGCTTCTCCAGGGGTGAGTTGTTTGCTAGCGATCCTCTGCCGAAATGTTTGTGCAAAATGATGAGAGTGAAATACTGAAATCTTGTGGCTGAATCTGAAAACCACAGGTCTGTGGGTTACTGAGTGCTCTACTGGTTAACCTCATTCAACCAGCCGCTGCACGCTGGACTCCGAAGGGAGATGCATGACTTTAAAAACTCGCTTTCTGATAAACTTTTGGGCTAGTTTGCTGctttaatgcactgtaaaaatgtatttgtttgcttTACTTAAAGTGTgttaacccattgcttttaaactgattagttgactttactaaagTGTGTTAACCCATCGCTTTTAAAGCAGTTAGTTGACTTAAAAATGTGTTAACC

Function

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0071932 replication fork reversal biological_process
GO:0009451 RNA modification biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0000725 recombinational repair biological_process
GO:0098536 deuterosome cellular_component
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001488 lncRNA downstream 138944 1350111 ~ 1352997 (-) False XLOC_000933
TCONS_00001487 lncRNA downstream 138944 1350111 ~ 1352997 (-) True XLOC_000933
TCONS_00003293 lncRNA downstream 176188 1291175 ~ 1315753 (-) False XLOC_000932
TCONS_00003292 lncRNA downstream 176972 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003294 lncRNA upstream 55903 1555296 ~ 1583206 (-) False XLOC_000936
TCONS_00002900 lncRNA upstream 73588 1572981 ~ 1578251 (-) False XLOC_000936
TCONS_00003295 lncRNA upstream 80525 1579918 ~ 1583206 (-) True XLOC_000936
TCONS_00003296 lncRNA upstream 232124 1731517 ~ 1736564 (-) True XLOC_000938
TCONS_00001496 lncRNA upstream 377798 1877191 ~ 1928225 (-) False XLOC_000939
TCONS_00001489 mRNA downstream 89638 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001483 mRNA downstream 492385 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA downstream 492385 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001482 mRNA downstream 777315 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001481 mRNA downstream 810825 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001490 mRNA upstream 119601 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001491 mRNA upstream 119760 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001494 mRNA upstream 375034 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA upstream 375677 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001499 mRNA upstream 389148 1888541 ~ 1894722 (-) False XLOC_000939
TCONS_00001486 other downstream 176188 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001485 other downstream 440884 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001476 other downstream 866861 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 1020016 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 1338095 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001492 other upstream 371468 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 374615 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 384967 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other upstream 390778 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001513 other upstream 1797974 3297367 ~ 3297451 (-) False XLOC_000952

Expression Profile

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