RNA id: TCONS_00019205


Basic Information

Item Value
RNA id TCONS_00019205
length 279
lncRNA type read_through
GC content 0.39
exon number 2
gene id XLOC_009364
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 32413314 ~ 32433673 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTATTATGGGACAATTTAAACTGCAAAGTCAAACAGTGCTGTTCAGTAAAGAAACAGTAGAGATCATTTTAATTCATGCAGGACAAATAAAAGACAGTAAAACATCAATCTCATTTTTGATGATGATGGGGCCTGGATGAATGTTTTCTTTGCTGTAGTGACAGGCCGTCATTTGCCACACATCCAGAATATAAACACCCACATCCTGAAAAGCCCAACGCAGAACTCTGTCCAGCTGCAGAGAATACCAGTCACTGCCAAAAACATCCTGTTGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018398 lncRNA downstream 825325 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00018395 lncRNA downstream 896800 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018361 lncRNA downstream 1245803 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018351 lncRNA downstream 1400602 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00019204 lncRNA downstream 1489225 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00018405 lncRNA upstream 199617 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00019206 lncRNA upstream 199617 32633290 ~ 32635777 (-) False XLOC_009366
TCONS_00018406 lncRNA upstream 201138 32634811 ~ 32635777 (-) False XLOC_009366
TCONS_00018407 lncRNA upstream 201396 32635069 ~ 32635777 (-) True XLOC_009366
TCONS_00019207 lncRNA upstream 380063 32813736 ~ 32817995 (-) False XLOC_009367
TCONS_00018400 mRNA downstream 29785 32351886 ~ 32383529 (-) False XLOC_009363
TCONS_00018401 mRNA downstream 29974 32353868 ~ 32383340 (-) False XLOC_009363
TCONS_00018402 mRNA downstream 47374 32357665 ~ 32365940 (-) True XLOC_009363
TCONS_00018397 mRNA downstream 825152 31564137 ~ 31588162 (-) False XLOC_009361
TCONS_00018391 mRNA downstream 896731 31513065 ~ 31516583 (-) False XLOC_009359
TCONS_00018403 mRNA upstream 3234 32436907 ~ 32595982 (-) False XLOC_009365
TCONS_00018404 mRNA upstream 3608 32437281 ~ 32596155 (-) True XLOC_009365
TCONS_00018408 mRNA upstream 461986 32895659 ~ 33325046 (-) False XLOC_009368
TCONS_00018409 mRNA upstream 463404 32897077 ~ 33172246 (-) False XLOC_009368
TCONS_00018412 mRNA upstream 842453 33276126 ~ 33304133 (-) False XLOC_009368
TCONS_00018399 other downstream 349905 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018396 other downstream 865462 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018378 other downstream 1051173 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018372 other downstream 1097766 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018370 other downstream 1113636 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018418 other upstream 1229382 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018421 other upstream 1273007 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018452 other upstream 1845748 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018481 other upstream 2661532 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018488 other upstream 2733622 35167295 ~ 35212237 (-) True XLOC_009400