RNA id: TCONS_00018443


Basic Information

Item Value
RNA id TCONS_00018443
length 3321
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_009380
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 33994575 ~ 34056879 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATATCAGATGCCAGTCAAACTGACTGTGAAGGCAAACCAAGGAATAGTGATGGAACTTGCAGTGATCCACAGCCCCCATCTGCTGCAGTACCATTAATAGTATCTGAGCTTTTGGGCAGCAGTGTGTACCTGAGGTGTACGTTTGCTGACAGTAATGCAACCAGCTCTATGGGATATATTGTGACATGGTGGCGACTCTCTCCCGAGGGCAACAGAGAAGAGCTCAGGACAGACACTACAATAGAAACCTTCGCTTTCATTGAGCTGGATGGCATCAACCTGCGACTGGGAGACAGAGTAccctttttatatttataattcacATCGATTCAGTTTCACATCCTTGATTCTTAACCTGGGTTTCTATGTGTCTCAGGTCCATTGCAGTTGCATTAGCTTTTTTCTGGAGTCTCCTGATATACAAAGCCTTCCATTGGAGAGTGAAGAGTTTTATGTAGGAATTCAGGTACGTTTCAGTTCTTATACAGTTACATATTTCAATGAGAAGGTATGAGACTTAAAATTTGTGTGCATGTTTTCCAGATGAAGCCACAATCCGTCTTTATTTCGGAAGATGGGAAAGAGTATAAACTGACGGTGGAGAGCACTGTGCCTTTACCATGCTCCTTGGAGAGATGTGTTTTACCTTTGCATCTTACTACAAGTAGTCAAGGTGAGAAGGAGCTGGGTGTTGATTTAGTCCTGTCCTCCTGTGAAGTCGAGCTTTCTCAAATCCCATGTAATGAAGGTGTGTGTAGTCGAGCATCTGTCCTCTACAGCGCAGTGACGGATATATGGAGGGATGGAAACAGAAGCACTGAAATACACATTAAACCCATAATCAGCACCAACTTCCTGTGGAATGGATACACTCCTCAAAGTGTGCAGATTCTTGTGCAGGATGTCCCATCTGCTCACTGTTACACTTTTACGGATCCTCATATCATTACATTTGACGGCAGGTAGAAGCTCTGCCAttctcaaaaatgtacatttaacgTATTTAAATGCATACTTTTCAATGCAAATGTACATCAATTatgattgtgtgtttgttggcAGGAGGTATGATAACTATCAGATCGGTACATTTGTGTTGTACTGGAGCACCGGTCGGCCATTTGAGGTGCATGTTCGACAGTGGGAATGTGCCGGCAGGACTGCTCATCCCACCTCATGTGTCTGTGGCTTCGCTGTCAGAGACGGACCGCACGTCATCACATATGACATGTGTAATGGACTGGCAGGAGAAACGAAACCACGGCTCTCTGTGAAGAACGGAGACATGGAAAAAAGTGGCATCCGTGTCTTTGAGTCCTACCAGGGCCGCAAAGTCACTGTTACGTTCTTGTCTGGGGCTTTTGTGCGTGCTGATGTGGCTGACTGGGGAATTAGTGTGACTGTACGGGCTCCGGGCTCTGATAAAGGACACACCGAAGGCCTGTGCGGGACCTTTGATGGACAGTCGATGAATGACTACCATACAAAAGGTGGAGAGACTGTGGAGGACAGTAGATCTTTTATCAATGCATGGAGGTTGGCCCCCAGAACAAGCTTGTTTGACAAAATCCCGATCAATGCAAGCAACTCCAGTCTGCATAATTACTGCCAATGTCAGCAAGAGAAACACCAATCATCCGACTCTTCCTCAAAGTGTTCATTATCCACCCTCAGCCGCTATTCCTCCATCATCCCTGCAATGGACGTCACATCCCAATACATCAGAACCACTCACAGCAGGCCTGTCCAACACCGTCCATCCCAGGGAAGCAGATACCAAATCCACAGACGCATCACAAATCCCCAAAGACCCCACAATCAAAGACGTGTCGTAAACCCAAACAGATCTCAAAAACGTCAGAAACGCCAGAGCCGCCAATTCCACTCTAGATCTTCTCCAAACCTCCAGGAGTCTGCATATAATTTCCCAGAAGACCATTCTTTGTGGGTTTCTCCTGATGCGCTGGTGTTTTCCTGGCCTACTGAATCAGGTCTGACTGAACGTGAGGCTCGGAGGCTCTGCGAGAGCACTTTGAGGAACTCCACGGTTGGTTCTGGTTGCTGGAGTCTGCTAGGTAAGGTGATTGAGCCGGCGGTGGAGATGTGTGTGGTCGACCTGCAGCTTAAAGACGACCAGGCCTGGGTTGGAGCCACTGTAGCGTTGCTGGAGAATGAATGTGAGAGGAGGCTGCTAGAGGAGGTCAAGTGGAGGAAGGAGAACAGGGATGTTCTGGTTTCACTGAAGTGTCCCAGCCTGTGTAGTGGGAATGGACAGTGCACAGATTGGGGATGCTCGTGCTTCCCTGGGTTTGGATCCTTTGATTGCAGCCAAATAtccgATGAGACTCCAGAGATTACCGAACTGGAGAATGGAGGACTTTGTGATGTCCAGTATGGAGTCTGTTCATCTGTTAAAGTTTTTGGTCAAGGATTTAAAAAGTCCTACAAGCTCAAGTGTGAAGTTGTGAAGGAAAAGATAGTAGATAGCGAATGGTCTTTGGATGATGCCCGACTGGTGCCAGCCTCTTTCCAGAGTTCATCAGCATTAGAGTGCCAGATCCCTGCAGATCCCTCCACCACCGCACACCAACCAGTCCTACGCTGGCAAATCAAGGTGTCTAATGATGGACACAGCTTCAGCAATGCAAAGATTTTGACTCTTTTTGATGGGACATGTCAGATTTGCACAGTCAGCTCCACGGTTATCTGCACACTAAAGAACAGAACGTGTAGTATTGACGGAGTGTGTTTTGGAGAGGGAGATCACAGCCCAAACAGCCCGTGTTTGACGTGCAGACCGGATCTTTCCAAATACAGCTGGTCCATCGCTGAGAAAAACGAGCCGCCTGTGTTTCACCCGGGTCAATCCACTCTGAAGGCTTTCTCCGGAGAGGATTTCGTCTATCAGTTTTCAGCATCTGATCCGGAGGGCTCTGCGGTTTTCTTCACGCTCCGCTCAGGGCCCAGGGATGCGCTTCTCTCTCCAGCTGGTCTGCTCATCTGGAAAGCTCTGTCCAGCACACCGGTGACCTTAGACCTGGCTGTAACTGATGACTGTAATGCTGTGACACAAGCAGCAGTGAAGGTGTCAGTTGACCCATGTGACTGTCAGAATGGAGCGTCCTGTGTGACCAACATGAACTTCCCCCCGGGGTCTGGTGAATACCTGTGTGTTTGTCCTGTTGGTCTGGAGGGGCTCAAGTGTGAAACCGATGTGGATGACTGCAGGTCAAACCCGTGTCTCTCAGGAACTTGTGTGGATGCATTAAACTCCTTTACCTGCCAGTGTTCAGAGGGCTTTACAGGTCAATTCCTTTAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-540 Predicted to enable calcium ion binding activity. Orthologous to human VWDE (von Willebrand factor D and EGF domains).

Ensembl:

ensembl_id ENSDART00000189764

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018440 lncRNA downstream 45496 33957926 ~ 33964911 (-) True XLOC_009379
TCONS_00018427 lncRNA downstream 122740 33879353 ~ 33887667 (-) True XLOC_009376
TCONS_00018426 lncRNA downstream 123044 33875205 ~ 33887363 (-) False XLOC_009376
TCONS_00019210 lncRNA downstream 123057 33879353 ~ 33887350 (-) False XLOC_009376
TCONS_00019209 lncRNA downstream 133076 33869579 ~ 33877331 (-) True XLOC_009377
TCONS_00018835 lncRNA upstream 416926 34468383 ~ 34478448 (-) True XLOC_009385
TCONS_00018836 lncRNA upstream 551065 34602522 ~ 34607406 (-) True XLOC_009389
TCONS_00019211 lncRNA upstream 607424 34658881 ~ 34668392 (-) True XLOC_009390
TCONS_00018496 lncRNA upstream 1363009 35414466 ~ 35661368 (-) False XLOC_009404
TCONS_00018837 lncRNA upstream 1365167 35416624 ~ 35661131 (-) False XLOC_009404
TCONS_00018442 mRNA downstream 9407 33995921 ~ 34001000 (-) False XLOC_009380
TCONS_00018436 mRNA downstream 44967 33937756 ~ 33965440 (-) False XLOC_009379
TCONS_00018438 mRNA downstream 45485 33939069 ~ 33964922 (-) False XLOC_009379
TCONS_00018437 mRNA downstream 45507 33939065 ~ 33964900 (-) False XLOC_009379
TCONS_00018439 mRNA downstream 45510 33951892 ~ 33964897 (-) False XLOC_009379
TCONS_00018444 mRNA upstream 1280 34052737 ~ 34056879 (-) True XLOC_009380
TCONS_00018445 mRNA upstream 120914 34172371 ~ 34214440 (-) False XLOC_009381
TCONS_00018446 mRNA upstream 125707 34177164 ~ 34213990 (-) False XLOC_009381
TCONS_00018447 mRNA upstream 125732 34177189 ~ 34213898 (-) True XLOC_009381
TCONS_00018448 mRNA upstream 164339 34215796 ~ 34322915 (-) False XLOC_009382
TCONS_00018421 other downstream 276301 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 347235 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018399 other downstream 1946998 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018396 other downstream 2462555 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018378 other downstream 2648266 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018452 other upstream 227964 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018481 other upstream 1043748 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018488 other upstream 1115838 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018513 other upstream 2478008 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 2822794 36874251 ~ 36874366 (-) True XLOC_009420

Expression Profile

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