RNA id: TCONS_00018448


Basic Information

Item Value
RNA id TCONS_00018448
length 2316
RNA type mRNA
GC content 0.47
exon number 23
gene id XLOC_009382
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 34215796 ~ 34326461 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCAAATGAAGAAAAGTGGGTCACTTTGAGTCCAAACGAATTCTCTCGTCTTCAGGACTATGCACAATacacaactaaaaaactaaaagatGTTCTCCAGGAGTTTCACGGAGGTGGGATTTTGGCCAAGTATAATCCTGAAGAGAAGCCGGAAATCCTCAATCAGGATTTTAAGGAGGGTTTTAAGCTCTTTATGGAGACGTTCCTGGAGAATGAACTTGACGAGGAGTTCTGTGAGCATCTCTTTCTCAGTTTCTGCAACAAAGACCCAAAGTCGAGCCCCTCCATGACAGAAAAGCAGAAAATCATGGGTCTGAAACTGATAAAGGGCAGCTGCCCACCCCTGAAGGTGACGTCCCAGTCCAGACCTCTCAGTACGGTCCAGCTGAAGGACATGATCTGCTACCTCTCTCTCTTGGAGGGCGGACGACCAGAAGACAAGCTAGAATTCATGTTTCGCCTGTATGACACAGATGGGAATGGGTTTTTGGACAGTAAGGAACTGGAGCACATTATCTCTCAAATGATGCATGTGGCAGAGTATCTGGAGTGGGACATCACAGAACTGAAGCCGATCTTGGAGGAGATGATGCAGGAGATTGACTATGATAATGATGGGATGGTTTCTCTGGAAGAGTGGCTCCAGGGCGGCCTGACCATCATTCCTCTGCTCGTTCTGCTGGGACTCGAAACTAATGTAAAGGACGACGGGCAGCACGTGTGGAGACTGAAGCACTTCAGTAAACCTGCCTACTGTAACCTGTGTCTGAATATGCTGATCGGATTGGGAAAACAAGGCCTCTGCTGCTCCTTCTGCAAGTACACGGTCCATGAGAGATGTGTGTCTCGAGCCCCCCCGTCCTGCATCAAAACATACGTCAAATCCAAGAAAAACACAGAGATTATGCATCATTTCTGGGTGGAAGGAAACTGTCCAAGCAAATGCGATAAATGTCACAAGACGATCAAGTGTTACCAGGGACTTACAGGCCTTCATTGTGTCTGGTGCCAGATTACTCTACACAACAAGTGCGCTTCACACGTCAAACCTGAATGTGACTGCGGGTCGCTGAGAGATCACATCCTTCCTCCAAACACAATATGCCCTGTTGTTCTGGTAATATCCCGTTTGCTTttgttatatacaGAGAGACAGTCTACTTTGAGGAAAGACTCCAACCAATCAGGAGGACGAACGAAAATACAGAGGACCAATTCAGTGTCAGTGGATGGACAGGGGCTACAGATTACACCATTAGAAGGAACTCATCCTCTGTTGGTTTTCGTCAACCCTAAAAGTGGAGGCAAACAAGGTGAAAGGATCTTCCGCAAGTTCCAGTACCTCCTAAACCCTCGTCAAGTCTACAACCTGACACTCTGCTGTCCTCTAGCATTTTCCCTCTCATTCAATGAAGTGCTTTTCTATTTCTTAGACAAAGCCAACTTTGAACAGAATCCTCCCGTGTGTGTACTTCCTCTCGGCACAGGAAATGACCTCGCAAGGTGTCTGCACTGGGGTGGAGGCTATGATGGAGAAAGTCTCCTGCAGATTCTGAAGGACGTCCAGGACAGCAGTGAGGTGATGCTGGACCGGTGGAAGATCAACATCACTCCTGTAGACCGAGATGAAGGTGGAGATCCCGTCCCGTACAGCATAATCAACAATTACTTCTCTATCGGTGTGGATGCATCCATCGCTCATCGCTTCCACATTATGAGAGAGAAGCATCCAGAAAGGTTTAACAGCAGGACAAAGAATAAGCTTTGGTACTTCGAGTTTGGGACCTCAGAAACCTTCTCAGCAACTTGCAAGAAGCTGCATGATTATCTTGAGGTGGAGTGTGATGGTATCACCCTGAATCTCAGCAACATCTCATTGGAAGGCATCGCCATCCTTAATATTCCCAGCATGCACGGAGGTTCCAACCTATGGGGAGAGAGTAAGAAACGGAGGGGCCATCGTCGAACTGGAAAAAAGTCTCCAGAAAAGAAAACCACAATTGTTGACCCCAAACAACTCCTTTTTGCTGTgcaagACCCATCAGATCAGCTGCTGGAGGTGGTGGGTCTGGAAGGAGCAATGGAAATGGGACAGATCTACACGGGGCTGAAGAGCGCAGGCAGACGACTGGCTCAGTGTTCATCTATCACTATCAGAACCAGTAAATCCCTCCCTATGCAAATAGATGGTGAGCCATGGATGCAGAGCCCATGCACTGTAAGTATGACCTGCACATTCAAACCACTGTTTctcaacatttttaaacttttcttttttatcaAAACAGGTCTCTCTTGCTATTATGGTTATTGA

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0046834 lipid phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0046339 diacylglycerol metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0046486 glycerolipid metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003951 NAD+ kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070126-1 Predicted to enable diacylglycerol kinase activity. Predicted to be involved in diacylglycerol metabolic process; intracellular signal transduction; and lipid phosphorylation. Predicted to act upstream of or within phosphorylation and protein kinase C-activating G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human DGKB (diacylglycerol kinase beta).

Ensembl:

ensembl_id ENSDART00000190543

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018440 lncRNA downstream 250885 33957926 ~ 33964911 (-) True XLOC_009379
TCONS_00018427 lncRNA downstream 328129 33879353 ~ 33887667 (-) True XLOC_009376
TCONS_00018426 lncRNA downstream 328433 33875205 ~ 33887363 (-) False XLOC_009376
TCONS_00019210 lncRNA downstream 328446 33879353 ~ 33887350 (-) False XLOC_009376
TCONS_00019209 lncRNA downstream 338465 33869579 ~ 33877331 (-) True XLOC_009377
TCONS_00018835 lncRNA upstream 145468 34468383 ~ 34478448 (-) True XLOC_009385
TCONS_00018836 lncRNA upstream 279607 34602522 ~ 34607406 (-) True XLOC_009389
TCONS_00019211 lncRNA upstream 335966 34658881 ~ 34668392 (-) True XLOC_009390
TCONS_00018496 lncRNA upstream 1091551 35414466 ~ 35661368 (-) False XLOC_009404
TCONS_00018837 lncRNA upstream 1093709 35416624 ~ 35661131 (-) False XLOC_009404
TCONS_00018445 mRNA downstream 1356 34172371 ~ 34214440 (-) False XLOC_009381
TCONS_00018446 mRNA downstream 1806 34177164 ~ 34213990 (-) False XLOC_009381
TCONS_00018447 mRNA downstream 1898 34177189 ~ 34213898 (-) True XLOC_009381
TCONS_00018444 mRNA downstream 158917 34052737 ~ 34056879 (-) True XLOC_009380
TCONS_00018441 mRNA downstream 159063 33994575 ~ 34056733 (-) False XLOC_009380
TCONS_00018453 mRNA upstream 11807 34334722 ~ 34418525 (-) False XLOC_009384
TCONS_00018454 mRNA upstream 31211 34354126 ~ 34408777 (-) True XLOC_009384
TCONS_00018455 mRNA upstream 105393 34428308 ~ 34458495 (-) False XLOC_009385
TCONS_00018456 mRNA upstream 105804 34428719 ~ 34468599 (-) False XLOC_009385
TCONS_00018457 mRNA upstream 172141 34495056 ~ 34568705 (-) False XLOC_009386
TCONS_00018421 other downstream 481690 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 552624 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018399 other downstream 2152387 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018396 other downstream 2667944 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018378 other downstream 2853655 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018481 other upstream 772290 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018488 other upstream 844380 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018513 other upstream 2206550 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 2551336 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018535 other upstream 3404919 37727834 ~ 37729166 (-) True XLOC_009432

Expression Profile

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