RNA id: CI01000169_00275483_00281463.mRNA


Basic Information

Item Value
RNA id CI01000169_00275483_00281463.mRNA
length 1683
RNA type mRNA
GC content 0.49
exon number 15
gene id CI01000169_00275483_00281463
representative True

Chromosome Information

Item Value
chromosome id CI01000169
NCBI id null
chromosome length 1065687
location 275396 ~ 281463 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTTCCTGATGGAGACGTTTCTGTTGTTTAAGGATCTCATTGGTAAACATGTCTATCCATCTGACTGGGTCACCATGATCATGGTGCAAAACCGAGTGTTCCTCCGAGCGATCAACACATACGCCGACACCATGAACCTCAAGTTCCTCGACAACAACAACTTTGAAGTGCAGTTATGGAATAATTACTTCCATTTGGCTGTGGCGTTTATTACCCAGGAGTCTTTGCAGTTGCAGCATTTCTCGCCCACCAAAAGAACCAAGATTTTGGCCAAATACGGGGACATGAGGAGGCTGATTGGTTTTGCTATCAGAGACATGTGGTACAAACTCGGTAAGAATAAGATCTGTTTCATTCCCGGGATGGTGGGTCCTATCCTGGAGATGACGCTCATCCCTGAGGAAGAGCTGCGGAGAGCAACAATCCCCATATTCTTTGACATGATGCAGTGTGAACACAACCACTCCGGACACTTCAAAAAGATAGTAAAATGTGCTTTCATAACTGCGTACAAACTCCCAGGAATCCTGCGCTGGTTTGAGGCCATTAGCACGACCCACACGACGGTGAGTCCGCTGGAGAACGCCATCGAGACGATGGGACAAACGAATGAGAAAATCCTCACCATGATTAACCAGTACCAGTGTGATGACGCTTTACCCATAAACCCCCTCTCCATGCTGCTCAACGGCATTGTGGATCCTGCCGTCATGGGCGGCTTCGCCAAATACGAGAAGGCGTTCTTCACAGATGAATACACACAGGAACATCCTGATGACAGAGACAAACTCATGAGACTCAAAGACCTCATCGCATGGCAGATCCCGTTGTTGGGCAGAGGAATCAGTTTTCATGGAAAAAGAGTGACCGATGACCTTCGTCCTTTCCACGAGCGCATGGAGGAGTGCTTCAAACAGCTGAGGAAGAAGGTGGAGAAGGAGTATGGAGTCAGAGAGTTGCCGGATATGGATGAGAGAAGGTCCACTCGCCCACGCTCTATGCTTCGCTCAGTCCGACAGTCTATCTGCTCATTGGCTGGATCTGAATGCGGAACGCCCACTAAGATACACCCGGACAGCTTGTCTTTGGACAGTGGCGTTCCTACATCTCCCTCCATCATCCCTCGTTCCAGTGGAAGTGTCAGTGTGATGGATGAGAGCGGTGTTGAAGTGGAGGTGAAACTGAGGAAATCCAAGAAGAAGAAGAAACCCAGTCGTGGCAGTATGATCTTCATCAGCGAGGAGAAAGAGCGGTGCAGCACCCTCGACAAACGGCTCTCCAAGAAGCAGGAATTCCGCAGCGACACAAATCTGTCTGAGCCGAGCGAGAGTGGCAGCGGCCTCGTCAACTCCAGATCTCTGCCCACTATTACAGGTCTGTCTCTGTCAGTAGCCAATGGGAGTGAGGAGATGGAGTCAGCGCGGTCCAAGCGTGACAGTAAGAGCGTGTCTGTGTGTCTGCCGTCTGACCGCACAAGTGACCGTCGCTCCAAAGGAGTCATAAACCTGCTCTTTAAAACCAAGCATAGCTCCAAAGCTGATGAAGCAAAGCCATCTTCTGAACCGTCTAATGATGCATCCATTCATCATTTCTGAGTCATTTGTCTCTCAATGTTTTTTACATTTTTGCTTCTGTTTTTGCTGTTTTAACTATGAAGAGAAATGCTTCAAAAAGCTAATAAA

Function

GO:

id name namespace
GO:0046633 alpha-beta T cell proliferation biological_process

KEGG:

id description
K12367 DOCK2; dedicator of cytokinesis protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424254 lncRNA downstream 3763 270273 ~ 271633 (-) False G371506
TU424255 lncRNA downstream 3763 270273 ~ 271633 (-) False G371506
TU424256 lncRNA downstream 3763 270273 ~ 271633 (-) True G371506
TU424209 lncRNA downstream 20285 254555 ~ 255111 (-) True G371463
TU424138 lncRNA downstream 245047 26887 ~ 30349 (-) True G371406
TU424189 lncRNA upstream 72008 353471 ~ 414507 (-) False G371443
TU424188 lncRNA upstream 121974 403437 ~ 414507 (-) True G371443
TU424304 lncRNA upstream 180255 461718 ~ 461968 (-) True G371554
TU424305 lncRNA upstream 192184 473647 ~ 473907 (-) True G371555
TU424308 lncRNA upstream 246530 527993 ~ 528237 (-) True G371558
CI01000169_00239489_00264787.mRNA mRNA downstream 9570 239056 ~ 265826 (-) True CI01000169_00239489_00264787
CI01000169_00177837_00222803.mRNA mRNA downstream 52593 177837 ~ 222803 (-) True CI01000169_00177837_00222803
CI01000169_00147221_00152422.mRNA mRNA downstream 122334 146991 ~ 153062 (-) True CI01000169_00147221_00152422
CI01000169_00136741_00140480.mRNA mRNA downstream 134744 135914 ~ 140652 (-) True CI01000169_00136741_00140480
CI01000169_00111265_00115790.mRNA mRNA downstream 159606 111013 ~ 115790 (-) True CI01000169_00111265_00115790
CI01000169_00317515_00372623.mRNA mRNA upstream 36052 317515 ~ 372623 (-) True CI01000169_00317515_00372623
CI01000169_00415801_00420215.mRNA mRNA upstream 133865 415328 ~ 420254 (-) False CI01000169_00415801_00420215
CI01000169_00517967_00527104.mRNA mRNA upstream 235220 516683 ~ 527104 (-) True CI01000169_00517967_00527104
CI01000169_00530094_00531803.mRNA mRNA upstream 246924 528387 ~ 531803 (-) True CI01000169_00530094_00531803
CI01000169_00595907_00621185.mRNA mRNA upstream 314109 595572 ~ 621185 (-) True CI01000169_00595907_00621185
TU424183 other upstream 135039 421926 ~ 431203 (-) True G371440
TU424208 other upstream 145209 426672 ~ 430082 (-) True G371462
TU424170 other upstream 377995 662695 ~ 662710 (-) True G371431
TU424171 other upstream 377995 659458 ~ 662710 (-) True CI01000169_00659765_00662464

Expression Profile