RNA id: CI01000169_00517967_00527104.mRNA


Basic Information

Item Value
RNA id CI01000169_00517967_00527104.mRNA
length 2784
RNA type mRNA
GC content 0.45
exon number 9
gene id CI01000169_00517967_00527104
representative True

Chromosome Information

Item Value
chromosome id CI01000169
NCBI id null
chromosome length 1065687
location 516683 ~ 527104 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTCATTAGCTGTGCTACATGCAAACATGGATCAGCTGCTGTCCTGTTCAGATGAGGGAGAGGCCATGACTATTCTGGGCAGATATTTGGATAATGTTGTGAATAAGCAGACGGTTTCTCCACCCATTCCCCACCTTCATGCTCTGTTGACCAGTGGCAACAACCCTCCACCTGAGATCGACGCCTTTGAGCTCATTAAAGCATCCTATGAGAAGTTTGGTAGCCTGCGTGCCGATGTCATCGAGCAGATGAGGTTCAAACAAAGGTTAAAGGTCATACAGTCACTAGAAGACACAGCCAAGAGGAGTGTGGTGAGAGCTATCATGACAGAGTCCGCTTTCACTATTGAGGAGCTGGAAGAACTCTATGTTCTGTTTAAGGCGAAACACATCATGAGTTGTTACTGGGGTGCAAGCAGCACGGCGGCGGAGCGTCACGACCCCAGCCTGCCGTATCTGGAGCAGTACCGCATCGACTGCGGGCAGTTCGTTCAGCTCTTCTCCGCTCTGGCGCCCTGGAGCTGCGGCCTTCACACCAACACGCTCTCTAGCCGACTCTTCCGCCTGCTCGACCAAAACAAAGACACTCTCATCAACTTTAAAGAGTTTGTCACCGGACTCAGTGGAATGTATCATGGCGATATGACAGAAAAACTCAAACTTCTCTACAAACTCCACCTGCCTCCAGCGTTGTGTCCAGAGGAAGCAGAGTCGGCGCTGGAGGCCACGCAGTTCTTCACTGACGACGACACGCCACAGGAGGAGAAGCCAAAGGACTATAAGTACTATCTGAGAATGTGGGCCAAAGAAAAAGAGCCAAAGAAAGAGAGTATCAAAGATCTGCCCCGGATGAATCAGGAGCAGTTCATTGAGATGTGTAAGACTCTCTACAACATGTTCAGCGAAGATCCCATGGAGCAGGAGCTGTATCACGGCATTGCTACGGTGGCGAGTCTCCTGCTGCGCATCGGAGAAGTGGGCAAGAAATTCACCAACAACGGCGGAAAGAAAGCCGAGGCCCTGCTGCCCTCCACCATTGACGCTCTGCAGCCAGAGAGGGATGACTCGTCCGGAGAGGGAGGATCAGGACAGTCCCTGGTCTCCAAGGCCCTGGCAGAGGCGCAGCTAGAGACGCCACCTCCCACGGCGGCTGGCTCCGATGAAGACGCCAAAGACGACACGTCTGTTTCGTCCTACTCCGTGGTGAGTGCCGGTTCGCTGCAGTGCGAGGACATCGCCGACGACACCGTGCTGATTGGCTGCATGAGCGGAGTGGGCGGAGATGGAGTGGATCGGAGGCGGGGCAGCGCGCCGGATGCCGATTGGTCGATCACATTCGAGCAGGTTTTAGCATCATTCCTGACGGAAACATCGCTGGTTGACTACTTCGAGAAGAAACACGACATCCAGAGCAAAATAGCGGCGTGCAAATTGCTGAGAGCGGTGGAAAGACAGACCAGTTCATCAAGCGATCATGATTTCTCTCTGACCACACAATGATTACACTCATACAGACATGCATGAACACACAAACACACACATACAGATGCAAAACAAGCATATGTGTATGTATGTCCGGATGCTGTCTATAGGAGTTTGATACTTCTGTGTCATAGTCTACAAATGATGTTTAAAAGAGGTTTTAGATGACCACGTTCCATCCTAGTGTCCCGTTTTGCTGGGTTTCATCATTTGAACGCGTGAACTTGCAGGTCTGGAATGGAGGATTATGGGATATGGCCCACACAAATCTAAATATATCTATAGGAACTGTGTATATTATACTGCTTCGGCTCATTATACAGATTAACGAATGAAACGTCACACTAAATATTTGATTTGCACACTCGTCTTGAGTCCCAGGTAGGAATGAGAGTGATTATCTCACACTAAAAGTGTACATCACTAATGCTTTCTTGCACGTGTGCTATAGCAGGATATATATCGGTGTGTTTGGCGGTAAGAAGTGTCCTTTAGGTGATGAAGCGTCTGCCTCATAATGCTCTGCTTTAACTCTTCAGATTCACTTTAACACCTCGGATGGAAACAGTTGTTCACTCTGCACTCAGCTTTGGTTCAAAGCCGTGTTTCTGTGTGTTAAAAATCAGATTTAGTGTTTCTAAGTAGGTCATTGCCTTGCTTAAAAGACTCTTACCGTTGGTTGAGGACAGCGTTGCACATGTTTGTTGTGGTGTTGCGAGGATGTCGTCATTGTTCAGATGTTTATTTGCCAGAAGCTACACAAACATTACAGCGCTGACTCGTCTTAGTCGTCCAAACCGTAATGATAGGTACAGTAAAAAATGTAGCAGATTAATTTAGCACTATAATGGCCTTTACCACGTAAAGCAAGACTTGTTTCTCGTTTATTCGCCACAATATTTTCTGCTGTCAGGCCAAAGCAAGTACAATCATTGGGCTTCATTCATGAAAATCAAGCAGAATGAATTTGTGTAAATCACCCATAATTTGTATGCAAATTGTAACATTGAAATTAAAAAAACCTTCGTAAATTGGAATGCACAAAAACATTTATGCAGCCATATCTGAGTAAACTGTTGCATAAAGTTTGTAAAACAGTAAATTTATGTAAATTGATGCACTAAATTAAAATTATGTAAATTGTATTAAATCATTTTACAAGTGATTTTAAGGCATCCCGTGTTGAATTAAAAGAAAACATTCAGTATGCTTTACATGATATTCATATTAAATTGTATTAAAATTAATTGATACATTGAATTTAGTTAAACCATTCTTATATAAATCATAGCATTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424305 lncRNA downstream 42776 473647 ~ 473907 (-) True G371555
TU424304 lncRNA downstream 54715 461718 ~ 461968 (-) True G371554
TU424189 lncRNA downstream 100770 353471 ~ 414507 (-) False G371443
TU424188 lncRNA downstream 100770 403437 ~ 414507 (-) True G371443
TU424254 lncRNA downstream 245050 270273 ~ 271633 (-) False G371506
TU424308 lncRNA upstream 889 527993 ~ 528237 (-) True G371558
TU424314 lncRNA upstream 17535 544639 ~ 544882 (-) True G371564
TU424317 lncRNA upstream 25833 552937 ~ 553151 (-) True G371567
TU424321 lncRNA upstream 31235 558339 ~ 558956 (-) True G371571
TU424322 lncRNA upstream 32034 559138 ~ 559376 (-) True G371572
CI01000169_00415801_00420215.mRNA mRNA downstream 96429 415328 ~ 420254 (-) False CI01000169_00415801_00420215
CI01000169_00317515_00372623.mRNA mRNA downstream 144060 317515 ~ 372623 (-) True CI01000169_00317515_00372623
CI01000169_00275483_00281463.mRNA mRNA downstream 235220 275396 ~ 281463 (-) True CI01000169_00275483_00281463
CI01000169_00239489_00264787.mRNA mRNA downstream 250857 239056 ~ 265826 (-) True CI01000169_00239489_00264787
CI01000169_00177837_00222803.mRNA mRNA downstream 293880 177837 ~ 222803 (-) True CI01000169_00177837_00222803
CI01000169_00530094_00531803.mRNA mRNA upstream 1283 528387 ~ 531803 (-) True CI01000169_00530094_00531803
CI01000169_00595907_00621185.mRNA mRNA upstream 68468 595572 ~ 621185 (-) True CI01000169_00595907_00621185
CI01000169_00659765_00662464.mRNA mRNA upstream 132491 659595 ~ 662464 (-) False CI01000169_00659765_00662464
CI01000169_00679772_00703207.mRNA mRNA upstream 151792 678896 ~ 703207 (-) True CI01000169_00679772_00703207
CI01000169_00708005_00711176.mRNA mRNA upstream 179753 706857 ~ 711360 (-) False CI01000169_00708005_00711176
TU424183 other downstream 85480 421926 ~ 431203 (-) True G371440
TU424170 other upstream 132354 662695 ~ 662710 (-) True G371431
TU424171 other upstream 132354 659458 ~ 662710 (-) True CI01000169_00659765_00662464

Expression Profile