RNA id: TU424404


Basic Information

Item Value
RNA id TU424404
length 303
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G371641
representative True

Chromosome Information

Item Value
chromosome id CI01000169
NCBI id null
chromosome length 1065687
location 811074 ~ 811376 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGCGCTTTAACAGGACAGGTTCCACTCAGAACAGGCCTCGCCATGGTCGACCAAAGAAGTTGAGTGCACGTGCTCAGTGTCATATCCAGAGGTTGTGTTTGGGAAATAGACGTATGAGTGCTGCCAGCATTGCTGCAGAGGTTGAAGGGGTGGGGGGTCAGCCTGTCAGTGCTCAGACCATACGCCCCACACTGCATCAAATTGGTCTGCATGGCTGTCGTCCCAGAAGGAAGCCTCTTCTAAAGATGATGCACAAGAAAGCCTGCAAACAGTTTGCTGAAGACAAGCAGACTAAGGACAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424402 lncRNA downstream 841 810029 ~ 810233 (-) True G371639
TU424401 lncRNA downstream 1311 809554 ~ 809763 (-) True G371638
TU424200 lncRNA downstream 2805 755064 ~ 808269 (-) True G371454
TU424371 lncRNA downstream 99425 711217 ~ 711649 (-) True CI01000169_00708005_00711176
TU424362 lncRNA downstream 153602 657187 ~ 657472 (-) True G371601
TU424410 lncRNA upstream 13116 824492 ~ 824707 (-) True G371647
TU424416 lncRNA upstream 18499 829875 ~ 830597 (-) True G371650
TU424417 lncRNA upstream 20957 832333 ~ 844044 (-) True G371651
TU424419 lncRNA upstream 25801 837177 ~ 837782 (-) True G371653
TU424420 lncRNA upstream 31013 842389 ~ 843380 (-) True G371654
CI01000169_00801511_00803912.mRNA mRNA downstream 7162 800056 ~ 803912 (-) True CI01000169_00801511_00803912
CI01000169_00769848_00794717.mRNA mRNA downstream 15698 769609 ~ 795376 (-) True CI01000169_00769848_00794717
CI01000169_00708005_00711176.mRNA mRNA downstream 99714 706857 ~ 711360 (-) False CI01000169_00708005_00711176
CI01000169_00679772_00703207.mRNA mRNA downstream 107867 678896 ~ 703207 (-) True CI01000169_00679772_00703207
CI01000169_00659765_00662464.mRNA mRNA downstream 148610 659595 ~ 662464 (-) False CI01000169_00659765_00662464
CI01000169_00858567_00865583.mRNA mRNA upstream 46695 858071 ~ 865583 (-) True CI01000169_00858567_00865583
CI01000169_00885977_00886294.mRNA mRNA upstream 74144 885520 ~ 886475 (-) True CI01000169_00885977_00886294
CI01000169_00895811_00905628.mRNA mRNA upstream 83948 895324 ~ 905628 (-) True CI01000169_00895811_00905628
CI01000169_01038714_01039940.mRNA mRNA upstream 227284 1038660 ~ 1040417 (-) True CI01000169_01038714_01039940
CI01000169_01049597_01056495.mRNA mRNA upstream 237901 1049277 ~ 1056794 (-) True CI01000169_01049597_01056495
TU424170 other downstream 148364 662695 ~ 662710 (-) True G371431
TU424171 other downstream 148364 659458 ~ 662710 (-) True CI01000169_00659765_00662464
TU424183 other downstream 379871 421926 ~ 431203 (-) True G371440

Expression Profile