RNA id: TU424419


Basic Information

Item Value
RNA id TU424419
length 417
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G371653
representative True

Chromosome Information

Item Value
chromosome id CI01000169
NCBI id null
chromosome length 1065687
location 837177 ~ 837782 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGTCACCCAGTTACCACAGCTGATCCGTCCCGGGGTCATGGCAAGACAAACAAATACCAGCAGACGCAAACACACGCATCGATCTCACTCAGTGGGGTTATGTAAAGATTTGAGCAGACAGTCTGCGGTTTATTCACCTCTGCGTCTTTCAGACTGATGATGTCGATGCCGCACCGTTGTCCTCGGCTCACCAAATCAGCGTCGAAGTCTTCCACGAGGATCAGGGTTTTGAGCGAGTGCTGTGTGCCGGAAACACAGTCCATCAGCAGCCTGGCCTTCTCGGCTACGTCACATACGACTGTAGAGATACAGGTTTTGTCGAGGATGTAGCCTATCGCTTCTGTGCCCAAGGTGTCGTATAGAGGAACTGATACCAGAGAGTATGTGTAGCAGGCCAGCTCTGAAATCGTCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424416 lncRNA downstream 6580 829875 ~ 830597 (-) True G371650
TU424410 lncRNA downstream 12470 824492 ~ 824707 (-) True G371647
TU424404 lncRNA downstream 25801 811074 ~ 811376 (-) True G371641
TU424402 lncRNA downstream 26944 810029 ~ 810233 (-) True G371639
TU424401 lncRNA downstream 27414 809554 ~ 809763 (-) True G371638
TU424420 lncRNA upstream 4607 842389 ~ 843380 (-) True G371654
TU424421 lncRNA upstream 7490 845272 ~ 846061 (-) True G371655
TU424423 lncRNA upstream 12383 850165 ~ 852249 (-) True G371657
TU424431 lncRNA upstream 33886 871668 ~ 873823 (-) True G371665
TU424446 lncRNA upstream 58917 896699 ~ 901942 (-) False G371679
CI01000169_00801511_00803912.mRNA mRNA downstream 33265 800056 ~ 803912 (-) True CI01000169_00801511_00803912
CI01000169_00769848_00794717.mRNA mRNA downstream 41801 769609 ~ 795376 (-) True CI01000169_00769848_00794717
CI01000169_00708005_00711176.mRNA mRNA downstream 125817 706857 ~ 711360 (-) False CI01000169_00708005_00711176
CI01000169_00679772_00703207.mRNA mRNA downstream 133970 678896 ~ 703207 (-) True CI01000169_00679772_00703207
CI01000169_00659765_00662464.mRNA mRNA downstream 174713 659595 ~ 662464 (-) False CI01000169_00659765_00662464
CI01000169_00858567_00865583.mRNA mRNA upstream 20289 858071 ~ 865583 (-) True CI01000169_00858567_00865583
CI01000169_00885977_00886294.mRNA mRNA upstream 47738 885520 ~ 886475 (-) True CI01000169_00885977_00886294
CI01000169_00895811_00905628.mRNA mRNA upstream 57542 895324 ~ 905628 (-) True CI01000169_00895811_00905628
CI01000169_01038714_01039940.mRNA mRNA upstream 200878 1038660 ~ 1040417 (-) True CI01000169_01038714_01039940
CI01000169_01049597_01056495.mRNA mRNA upstream 211495 1049277 ~ 1056794 (-) True CI01000169_01049597_01056495
TU424170 other downstream 174467 662695 ~ 662710 (-) True G371431
TU424171 other downstream 174467 659458 ~ 662710 (-) True CI01000169_00659765_00662464
TU424183 other downstream 405974 421926 ~ 431203 (-) True G371440

Expression Profile