RNA id: TCONS_00018513


Basic Information

Item Value
RNA id TCONS_00018513
length 776
RNA type processed_transcript
GC content 0.37
exon number 2
gene id XLOC_009417
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 36506014 ~ 36533437 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACAACTCCATTTTTCTCTCCGCTACGAGGAACCGGTAGATGCTGCGCTCTATGAACTGATGTGATACCAGAGTCTAAAATGAACACCAAGGGAGTCAGTGTCAATGATTCCTATTTACTTTGAATGGATGACGTCGAGCATggccgaactgaattgtggatctgtcggcaaTGCTTCAGCAGCGTTGCTCACAGCAGAAGTTAGAcgtttctcaacttttcaagtgccaacggaagcatcagccaaacATGACagctgctatgatgatcgtgtCAGCCTCAAAACACGCCCTCCATCAAGagttgatgctgaagccctgtGAGAATTGCGTGTTACTCTCATTTTTCTAGAGTAAAGGAATATGTCTGTGTTTCTGTCCTCTTTGTTGGCTATAATTTAgcctgaaatttatttatttattttgttttactttgttttttaaaaagttttacatgCAGTGAATGAAATGTAAGAATATATGGATTCTAAAAAATGACTAAATGGGCTGTATTATTCATGCCAGGCCAGTAGCTGGTGACGTTAgcttgtaaaacaacaacaaacgcTTCACCTATTAAAGAAGCAAATCTTAAATTGATTTGGGATTTTTACGCTATCTTAAAAAAGATCTTATATTTTATTAGGAAATCTTAAAattgtgtcattaagtttgaaaATCTGCTTTTAGGTCTGTTAGCAAGCAACCACAAGCTGCTAATAGGTTAGCATAAACAAAAGGATAAAACAGGCAAGCTTTAATTTTAGTATTGTGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154997

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019218 lncRNA downstream 26276 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018839 lncRNA downstream 91619 36421591 ~ 36437846 (-) True XLOC_009415
TCONS_00018510 lncRNA downstream 159779 36365724 ~ 36369686 (-) True XLOC_009414
TCONS_00019215 lncRNA downstream 643092 35761681 ~ 35886373 (-) False XLOC_009407
TCONS_00019217 lncRNA downstream 643267 35864583 ~ 35886198 (-) False XLOC_009407
TCONS_00018840 lncRNA upstream 251232 36784479 ~ 36784773 (-) True XLOC_009419
TCONS_00018519 lncRNA upstream 726107 37259354 ~ 37264265 (-) True XLOC_009422
TCONS_00019219 lncRNA upstream 1197808 37731055 ~ 37733875 (-) True XLOC_009433
TCONS_00018545 lncRNA upstream 1294138 37827385 ~ 37829157 (-) True XLOC_009441
TCONS_00018553 lncRNA upstream 1343469 37876716 ~ 37880887 (-) False XLOC_009444
TCONS_00018508 mRNA downstream 159722 36358144 ~ 36369743 (-) False XLOC_009414
TCONS_00018509 mRNA downstream 163625 36358164 ~ 36365840 (-) False XLOC_009414
TCONS_00018506 mRNA downstream 171576 36351219 ~ 36357889 (-) False XLOC_009413
TCONS_00018507 mRNA downstream 173201 36353080 ~ 36356264 (-) True XLOC_009413
TCONS_00018505 mRNA downstream 176482 36349009 ~ 36352983 (-) False XLOC_009413
TCONS_00018514 mRNA upstream 20576 36553823 ~ 36939655 (-) False XLOC_009418
TCONS_00018515 mRNA upstream 23256 36556503 ~ 36660789 (-) False XLOC_009418
TCONS_00018516 mRNA upstream 23256 36556503 ~ 36727462 (-) True XLOC_009418
TCONS_00018518 mRNA upstream 488771 37022018 ~ 37104165 (-) True XLOC_009421
TCONS_00018520 mRNA upstream 886305 37419552 ~ 37436082 (-) False XLOC_009423
TCONS_00018488 other downstream 1317228 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 1416679 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 2249930 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018421 other downstream 2795359 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 2866293 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018517 other upstream 341004 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018535 other upstream 1194587 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 3535764 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 4860154 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 4996013 41529260 ~ 41543440 (-) True XLOC_009482

Expression Profile

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