RNA id: TCONS_00003299


Basic Information

Item Value
RNA id TCONS_00003299
length 3614
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_000940
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2000666 ~ 2005535 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAAAACAATAGAGCTGGACTATGACATCACATCCTGCTGTCCATGTTCCTTCTAAAACAACTCATTTAGCATGCTTATTATTATCTAGACCATTCTTTAAGCAGTTGCTCACTCCATCTTTCTAttgtatcatatcatatcatactCGTAGTGTTCAgtatgcaaacacacaaacatcgcAATTTAGTTTGCATGATGACATCAACAACATTTCAACTTCACATTCAAACAATGTCAAAGACAGCCTCAAACTTCaatatcttttaaaaattaataataaaaacaaagagaTAAAGTTTATAAAACCCGAAGCACTTCTGAAGACCGAAAGGATTTTACAAGTCTGTATGCATTTTTAGCGCTGAATTAATGTCAAACATCTAATActgaagaaaaagagctggagaaTAAACCCAATCCAGAATGTTTGCCGAGCACAAACACTGTCAATATCCATATGGGAGATTCAATGGGTTTTTTTCATCCCAGCGCAGACAGACGATAGCTTCAGGAGTGAGACAAAGATCTTCAAAAACAGACAAAGAAGAAGAAGGTCAGCCGATGCCCCTGAGGCCTCACTGGAGACGAGAGTGCTCATTTTGAGGGTCTTTTGGCCCCTAATGCACTAATTTCAGCTCTACTTGCTCCGTGAAGCAGCGCTGGAGCTTCTGAATGAGTTTGTAGTGGAGCTTCAAGACCAGGCCCAAGGCACAGATTCAACCGAAGCAAAACCCTGACTTCTGTATGACTTCATTTGACCCGTCTTCAGGAGTCACTGGGTCAATATTATGTCTTCTTGAGGAGCAGCCACACTAGACCTTCATCATGTAACCTTCATTCATATTTGTGtaagggatgcacaatatatatattgcaagTCAGACTGGTTAGAAATACTTGCCTTAGCTTATATTATTGCGAAACGTAAAATATGTTGCTTTAGATACGTTTCATTGTatctttcagatgacaaatccactggaaggcgctgtttacatttttccaaagctgaaatacgttacttagggtgtgtCTTGTTTTACGTTTTAtaaaacaaatccactagagggcgctgtctaaatttttgcaaaatgtaaaatacattacttGGTGTATGTTTTGTTGTATATTTCAGATGACAAGTCCATTAGAGGGCGATGTCgacatttttgaaaattttcaaTACATTAGGGTTTGTTTTATTGTCTACTAGAGGGTGCCGTCAAGATTTTTTCCAAATGTAAAATACGATACTTGGTGTACGTTTTGTTGTATATTTCAGATaactaatccactagagggcactgctGACATTTTTGCATATTAAAAAATACGTTACTTGGTGTATGTTTGGCAGtatatttcagatgacaaatccactagagggcgctgtcaacatttttgtaaaatgtgAAATACGTTACTTGTACGTACGTTTTGTACGTTTATATACTGTACGTTTTGTTGTatatttcaaatgacaaatccactacaggacgctgtctatatttttgtgAATGTAGTAGTATTTCTAGGAGGTTGCCAAGGTGCTTTGGCTGTTGCTATGATGTTCAAAGTGTTTTCGAGGCTGCTGCCAGTTAGCTGTAACCATTCAAGTGGCTGCTACAGACTTGCTAATCAATGACTGGAGCTTTAAAAGCAGTTGTTAATATGTTGCAATCAGTGTtgggaaataataatatattataatcttaagtcactttgttaaagacAGTAACTAaatctgtttattattttatttttaagaaaaggTGTTTTTTTAAGCGCAAGATAGGCTTAAAATTGTaacgtatatattttttttacccaactCTGGTTGCAATGTGGTTTCGAGGGTCTTGCTAGTTAGCTAGATTGTAGTTGTATTgtcactttaaaaaagaaaagatgccATGTTTTAACAATgagatgtaaaatgtatttaacaaaataCTATCCATTCATAAAACATATTCTGCCAGGTCCTAATTAATCTAATAAGCTGACAATCTAGTGTGGCCACCCCTGTCGCATTACAGTTGACCAGCTGACAGCAGTTGGCTAGTTAGCTTTCAGAAGCCCAGAGTTGAGTCAGAGCTGGTAAACTCTGGACGGATTGGAGAACAAGACCGAACGGTTCCCAAAATACAGATGAAATGAACAGTCACAAAATCACAAATAAAACATCAGCGTTCACATTGTGACGTGGGTTCAGCTCCTCCCATGTCTCGCAAAGGGGAAAGTAGCACCAAACTCAGAAGAATCACGGTATAAGCTAGTGTTTTTAACCCTGATCTGGAAGCAGTCTCTTTGGAGCTTGATGTAGTGTAAAATAATCCTTCAGTTTCTCATTGAACATTTCTGGACTTACCAAACGTTCCTATATCCAACAGAAATGTTTCCTGGCTGATAATGATGGGTTTTAGTGCAATATCAGAGCATTTAATCCTGGCTGTTGACTCTGATTCAGTAGTTATTCCTCTGAGAGTGTAGTTTCTACAGTGACCGAGAGAGATTAACATGCTgcagtttaagaaaacacatgaacGCCAGCAAATTAAGATAAGATCCTCATCGGTTTGACAGCATAcatgttgcaaatcctcacaacgcatacaaaataataaaatgtgctgcattttctcacaactttGAGCATACACAACGAACATCGTGTTTAATAAATGACTAAACGTCACCATATTTCGAAAGATCATGCACCCATTGGCTAAATTCTCCATCAGTCAAACTAGAGAGTAAGTTACCGGCTAAGAGACTGACAGATCACCCGactgctttgtttagattttagggtaacactttcttttgatggtccatttgagtattagtagactgtctgcttaatatctgctgatactggtccttcaacagacatttaactgactataagaaactttgcaagtacatgccaacttacactAACACTATCGGTCTACTTGTAATCTAGTGAAGCTTAATTtatcaaactaatttcgagaggagtacgTACTCATGATTAAACCAGCTGGCTCATattagctaatcacgatcctTCAATCCCTAGTTCCTATATATATCTCCTCCTTTTCCacttacaactatcttcgtcttgaagaatcccctccgccctcttccacctttatccaaaaTAGGTAGCACGGTGGCCCAGCAGCAATACCAGTAGCTCCGGCTCCCTACTGAGCTTCTGGTATTTCTGCGTGGTGCTAGCCCGCAgttctctctctcaaaaaataataataataataataatttttctccGCATAATAGACCTCTTAAACCTAAGTCTCTTTTACTAGTCGTCTcgctctcaggaagttcaccttggctAGCTgcgggggagttttgagatcgccctgagctcaatctcccttcGCCCcacaaagggagggagccctggactcgaggaatgccttgagctcagggctctctcccgggacagcatgccaaatgagCTTTCTTAAGTCATGAGCtacgtgtgaactcttgaaatgagaatcagttggcatgtagatgcaatgtaagcttaaattcaacaaatggaccattaaaattaAGTGCGAGCAAAtttagtaactataactttgacttttt

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0006812 cation transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005588 collagen type V trimer cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001496 lncRNA downstream 72441 1877191 ~ 1928225 (-) False XLOC_000939
TCONS_00001498 lncRNA downstream 72441 1887620 ~ 1928225 (-) False XLOC_000939
TCONS_00001501 lncRNA downstream 102259 1890171 ~ 1898407 (-) True XLOC_000939
TCONS_00003296 lncRNA downstream 264102 1731517 ~ 1736564 (-) True XLOC_000938
TCONS_00003295 lncRNA downstream 417460 1579918 ~ 1583206 (-) True XLOC_000936
TCONS_00003302 lncRNA upstream 88484 2093996 ~ 2096349 (-) False XLOC_000944
TCONS_00003303 lncRNA upstream 88484 2093996 ~ 2101261 (-) True XLOC_000944
TCONS_00003304 lncRNA upstream 233699 2239211 ~ 2251036 (-) True XLOC_000945
TCONS_00002901 lncRNA upstream 489509 2495021 ~ 2502744 (-) False XLOC_000949
TCONS_00003305 lncRNA upstream 492361 2497873 ~ 2502743 (-) True XLOC_000949
TCONS_00001499 mRNA downstream 105944 1888541 ~ 1894722 (-) False XLOC_000939
TCONS_00001494 mRNA downstream 115072 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA downstream 115150 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001491 mRNA downstream 369267 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001490 mRNA downstream 373179 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001502 mRNA upstream 42535 2048047 ~ 2051599 (-) True XLOC_000941
TCONS_00001503 mRNA upstream 54918 2060430 ~ 2061419 (-) True XLOC_000942
TCONS_00001504 mRNA upstream 69001 2074513 ~ 2075529 (-) True XLOC_000943
TCONS_00001505 mRNA upstream 326125 2331637 ~ 2334254 (-) True XLOC_000946
TCONS_00001506 mRNA upstream 441484 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001497 other downstream 72555 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other downstream 106661 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001493 other downstream 115066 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001492 other downstream 125548 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001486 other downstream 684913 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001513 other upstream 1291855 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 1291972 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 1292091 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 1292336 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001517 other upstream 1292494 3298006 ~ 3298088 (-) False XLOC_000952

Expression Profile

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