Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00018600 |
| length | 1528 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 4 |
| gene id | XLOC_009470 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 40217256 ~ 40267485 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0097324 | melanocyte migration | biological_process |
| GO:0034765 | regulation of ion transmembrane transport | biological_process |
| GO:0051876 | pigment granule dispersal | biological_process |
| GO:0051877 | pigment granule aggregation in cell center | biological_process |
| GO:0043473 | pigmentation | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006813 | potassium ion transport | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:1990573 | potassium ion import across plasma membrane | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005242 | inward rectifier potassium channel activity | molecular_function |
| GO:0005244 | voltage-gated ion channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070129-1 | Predicted to enable inward rectifier potassium channel activity. Acts upstream of or within establishment of pigment granule localization; melanocyte differentiation; and melanocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; caudal fin; eye; gonad; and integument. Used to study Leber congenital amaurosis. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 16 and snowflake vitreoretinal degeneration. Orthologous to human KCNJ13 (potassium inwardly rectifying channel subfamily J member 13). |
| ensembl_id | ENSDART00000063777 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018598 | lncRNA | downstream | 44816 | 40162306 ~ 40175862 (-) | True | XLOC_009469 |
| TCONS_00018597 | lncRNA | downstream | 59804 | 40160368 ~ 40160874 (-) | False | XLOC_009469 |
| TCONS_00019229 | lncRNA | downstream | 91137 | 40125409 ~ 40129541 (-) | False | XLOC_009468 |
| TCONS_00019231 | lncRNA | upstream | 2433 | 40248829 ~ 40260796 (-) | True | XLOC_009470 |
| TCONS_00018601 | lncRNA | upstream | 109983 | 40356379 ~ 40360420 (-) | False | XLOC_009471 |
| TCONS_00018604 | lncRNA | upstream | 109983 | 40356379 ~ 40360424 (-) | False | XLOC_009471 |
| TCONS_00018603 | lncRNA | upstream | 109983 | 40356379 ~ 40360584 (-) | False | XLOC_009471 |
| TCONS_00018602 | lncRNA | upstream | 111017 | 40357413 ~ 40360121 (-) | False | XLOC_009471 |
| TCONS_00018593 | mRNA | downstream | 44784 | 40137564 ~ 40175894 (-) | False | XLOC_009469 |
| TCONS_00018596 | mRNA | downstream | 63165 | 40154158 ~ 40157513 (-) | False | XLOC_009469 |
| TCONS_00018595 | mRNA | downstream | 63347 | 40154158 ~ 40157331 (-) | False | XLOC_009469 |
| TCONS_00018594 | mRNA | downstream | 63513 | 40150705 ~ 40157165 (-) | False | XLOC_009469 |
| TCONS_00018588 | mRNA | downstream | 155382 | 40051218 ~ 40065296 (-) | False | XLOC_009466 |
| TCONS_00018607 | mRNA | upstream | 922815 | 41169211 ~ 41234144 (-) | False | XLOC_009473 |
| TCONS_00018608 | mRNA | upstream | 926158 | 41172554 ~ 41235027 (-) | False | XLOC_009473 |
| TCONS_00018609 | mRNA | upstream | 932247 | 41178643 ~ 41234139 (-) | True | XLOC_009473 |
| TCONS_00018611 | mRNA | upstream | 1003376 | 41249772 ~ 41290415 (-) | False | XLOC_009475 |
| TCONS_00018612 | mRNA | upstream | 1041723 | 41288119 ~ 41310340 (-) | False | XLOC_009475 |
| TCONS_00018590 | other | downstream | 151551 | 40069011 ~ 40069127 (-) | True | XLOC_009467 |
| TCONS_00018535 | other | downstream | 2491512 | 37727834 ~ 37729166 (-) | True | XLOC_009432 |
| TCONS_00018517 | other | downstream | 3346312 | 36874251 ~ 36874366 (-) | True | XLOC_009420 |
| TCONS_00018513 | other | downstream | 3687431 | 36529465 ~ 36533247 (-) | True | XLOC_009417 |
| TCONS_00018488 | other | downstream | 5008441 | 35167295 ~ 35212237 (-) | True | XLOC_009400 |
| TCONS_00018622 | other | upstream | 1147005 | 41393401 ~ 41396073 (-) | True | XLOC_009478 |
| TCONS_00018633 | other | upstream | 1282864 | 41529260 ~ 41543440 (-) | True | XLOC_009482 |
| TCONS_00018660 | other | upstream | 2031277 | 42277673 ~ 42283815 (-) | True | XLOC_009502 |
| TCONS_00018661 | other | upstream | 2282394 | 42528790 ~ 42528904 (-) | True | XLOC_009503 |
| TCONS_00018665 | other | upstream | 2482074 | 42728470 ~ 42728586 (-) | True | XLOC_009507 |
