RNA id: TCONS_00003302


Basic Information

Item Value
RNA id TCONS_00003302
length 327
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_000944
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2093996 ~ 2101261 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAAACATAAACACCATCACCGCCATCTCCTGCGGGACCAGCTTCTCGTACACAAAAATCACGCTGGAAAACATTGAGATTTCACCTTCTATAACCTCATGCACATTTGCATCCCTGAAAACAAACATGTGCGAGTGAGGGAATGAGAATGCGACTCGGATGGCCATTTGGGGAGTTGTTTTGATGTGAGTTGAAGCTTCACTGGTGCTGAGATGTAAAGACGCTTCGCTGGTTAAGCTCTTCTGTCGAAAGGTCACCCGTCCGTGGCTTTGAGCTTTAAACGGATGCCACCAGCCCTCAAACCCAACACATCGATTCATAAAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003301 lncRNA downstream 88461 2000666 ~ 2005535 (-) True XLOC_000940
TCONS_00003300 lncRNA downstream 88474 2000666 ~ 2005522 (-) False XLOC_000940
TCONS_00003299 lncRNA downstream 88484 2000666 ~ 2005512 (-) False XLOC_000940
TCONS_00003298 lncRNA downstream 88488 2000666 ~ 2005508 (-) False XLOC_000940
TCONS_00003297 lncRNA downstream 88790 2000666 ~ 2005206 (-) False XLOC_000940
TCONS_00003304 lncRNA upstream 142862 2239211 ~ 2251036 (-) True XLOC_000945
TCONS_00002901 lncRNA upstream 398672 2495021 ~ 2502744 (-) False XLOC_000949
TCONS_00003305 lncRNA upstream 401524 2497873 ~ 2502743 (-) True XLOC_000949
TCONS_00001511 lncRNA upstream 608255 2704604 ~ 2714275 (-) True XLOC_000950
TCONS_00003306 lncRNA upstream 1200258 3296607 ~ 3299853 (-) False XLOC_000952
TCONS_00001504 mRNA downstream 18467 2074513 ~ 2075529 (-) True XLOC_000943
TCONS_00001503 mRNA downstream 32577 2060430 ~ 2061419 (-) True XLOC_000942
TCONS_00001502 mRNA downstream 42397 2048047 ~ 2051599 (-) True XLOC_000941
TCONS_00001499 mRNA downstream 199274 1888541 ~ 1894722 (-) False XLOC_000939
TCONS_00001494 mRNA downstream 208402 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001505 mRNA upstream 235288 2331637 ~ 2334254 (-) True XLOC_000946
TCONS_00001506 mRNA upstream 350647 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001507 mRNA upstream 350676 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001508 mRNA upstream 351702 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA upstream 353791 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001497 other downstream 165885 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other downstream 199991 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001493 other downstream 208396 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001492 other downstream 218878 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001486 other downstream 778243 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001513 other upstream 1201018 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 1201135 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 1201254 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 1201499 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001517 other upstream 1201657 3298006 ~ 3298088 (-) False XLOC_000952

Expression Profile

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