RNA id: TCONS_00018612


Basic Information

Item Value
RNA id TCONS_00018612
length 6366
RNA type mRNA
GC content 0.44
exon number 16
gene id XLOC_009475
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41249772 ~ 41311295 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACTGCTGTTTGAAGTGAAATGGGAAAGAAGAAGGTAAAGGACAGAAGTGCTGGAACAGACAGCAGCTCTGAGACTGCAGGGCCCTCCTGCACTCACATTCGTAAAGGAACAGAGAACAGCGTACTGAAGAAAGCCTGTCTGAATGAGCACTGGAGCTCCTGTCAAGACTGTGAGCAGGACAAGCCTGAAGAAAAGCAGATCTTAGAGGATCAGACTGACGGAGAGAGTCCAGCTGTGTGGATGTGTCTGAAATGTGGACACAGAGGATGCGGGAGATCAGGGAATCAGCACGCTATCAAGCACTACGAGACCCCTCGCTCTGAGCCACACTGTTTAGTTCTCAGCCTGGACGTCTGGAGTGTCtggtgttaCATCTGTGATGATGAAGTGCAGTATTCCAGCACAGGGCAGCTGGCACAGCTGATCACTAATATCAGAAAACAAGTGCTGACGGCTCCTGACAAGAGGAATGCCAGCAAAAAAAGTTGGAAAGAAGACATCTCTGTGATGAATTCTGCAGAGCAAACGCAGGATGAAGAGAAAGGGAAGAAGGGGAAGCAGAAGAGCAGCTCGAAACAAGAGGACAGTCCTAAAAGCCATCAATCAGCCGCCGCTGGAAGCTCAGCTGTGGTGTCTGTCAGGGGTCTCAGTAATCTGGGAAACACGTGTTTCTTCAATGCAGTCGTGCAGAGTTTATCACAGACACAGTATTTGAGGGAGCTGCTGAAGCAGATTGCAGAGGAGAAGAGCAGCTTCTCCATCACTCCAGCACTGTCATCTGAGCTGGATCCTCTTCAGATCCAGCTGGAAAGGCCTGGATCGCTCACTCTGGCTATGTGTCAGCTAATGAATGAAATCCAAGAGACCAAGAAAGGTGTTGTGACTCCTAAAGAGCTCTTCACACAAGTGTGTAAAAAAGCTCCACGTTTTAAAGGCTTTCAGCAGCAGGACAGTCAAGAGCTTCTGCGGTACCTTCTGGATGGCATGAGAGCTGAAGAAGCGAAAAGAGTAAATTCAGGAATTCTGGAGGCTTTAAAATCTTCTGGCAAAAACTTTGAGGCTGAGCAGACGAAGAAGATCGTTAAAGAGTATGAGAAAGACGGAGCGCCCAAGAACTTTGTGGACCGAGTGTTTGGTGGAGCGAtgagcagcacagtgatgtgtaaAGAGTGCAAAACTGTATCCCTGGTCACTGAGATGTTTCTGGATCTTTCTCTTCCTGTAGCCGATGAGGCCTACAGGAAGAAGAATCAGAAGAAAGCAGTCCAGCATCGACACAGTGTCAGTGATGATGGAGACCAAGACACAAGTTCTCTAGCCAATGGGAATGAAGACATGCCTACAGGAACAGGAAGCAAATATCAGCAGAAGAAAGCCAAAAAACAGGCCAAGAAACAAGCcaagAATCAGAGACGGCAGCAGAAACAGGGCGGTAAAGTCACCCTAGATGCCATAACCAATCAGAGCTCAACAGATCCAGCAGACAGTTCCATGCAGACTCAGACGGTCTCCGTAAACGGCAGCGCTGATGCACAACCAGCAGACACCAACCAAGAGGATTTGAGCCTCGAGAAACACAACGAGGATCAAGATGATGAGGAACCAGAGCAAGAACAAGCTGCTTCAGTGAACAACCGCTTCACTGCATTATCTGAAGACCAGACAACTGAAGATATAGCAGAACAAGtgaatgaagatgaagatgaaattGAGCAGAATTGTGCTGAAGAGGAAGAGCTAGTAGAAGAACTGAATACAATGTCTCTGACAACACCATCAGAAGGTGATGTAGAAAATGGAGAAGACACCTTGGAGGATGTTAAAGAGTATACCGTGGTAAATCGGGACCCTGAGCTGGCATTTCGAGCACTGGCCTCCAGGACGGCACCAGTGAAGCAGGAGTGTTCAGTGGAGTCCTGCCTGTATCAGTTCACTGAGGTGGAGCATCTGACTGAGAACAACAGACTGATGTGTGTTACATGCACTAAACAACAGCCGGGATATAAAGATGGTTGTAAGAAGGCTGTTTACAGAGATGCACTGAAGCAGATGCTGATCTCTGATCCTCCAGTGGTGCTCACCCTCCACCTGAAGAGATTCCAGCAGGTTGCATACAGTGTTTGTAAGGTCAACAGACACGTGCAGTTTCCTCAGATCCTGGATCTCGCTCCATTCTGCTCTTTAAACTGCACGGGTGTAAAAGAGGGCGAGACGCAGGTGCTGTACAGTCTCTATGGCATAGTGGAACACAGTGGCACCATGCGCTCTGGACACTACACTGCCTATGTTAAATCACGACCCTCCACACACAATTGTGTACAAAACGGGACTGCTGCTGCATCAGGTGACGCCGAGGCCAGTAAAGGATCCTGGTTTCACATCAGCGACAGCAGCGTCCATCCGGTTCCAGAGGCCAAAGTACAGAGTTCCCAAGCCTACCTCTTATTCTACGAGAAGATCTCATAAAGCTTTGCTAAAACGAGCTACGATCCATACAAAGGGCTGCTGGTGCTTCATTCTGACTGCTGGGAAATCTACATAAAACAATGCAAACAACTGGAAACTTGACATCATGTTATTTGTTTATCAGCTCTTATTCAGGGGAAACTTTTAATACATCTAAACCAGTgattcccaaccctgttcctgaagacacACCAATAGtgcacattttcaacctctcccctACTAAATggcatccaaaatatgtactgttggtgtgcctctaggaacagggttgggaaacactgatcaaAGTGACATGCAGAACCTAATTGTGATCATTAGgattttttaaagttaataagGCTCATTTGTGATTTGAAAGTGATTAATTGTTCATATTTCCTACCTCTAGGTCTTGATAATACAGTCTGAAGAGGCTTTGTTGTGGTGCATTTCTCAACATTTATCTCCATATGCTAtatggcagtgtttctcaaccacgttcctggaggcccatcaacactgcatgttttggatgtctcctttgtctgtcacacccattacatgtctttcagtctctgctaatgaggagatgatctgaatcaggtgtgtttggtaaaggagacatggaaaatgtgcaaagATGGTGATCCTCCacgaacgtggttgagaaacactgctatataGGACTTTGTTGTCAAGTCTGGGAGTCCTTTGAATCAATTAGAGTCAATTTTCACCTCAAAATGATGataattaagcacattttccAACAATGTTCATTGCTCTTATGCAAATAATCTTTTATTAATATGAATTTAATGCTGCAAATTATCATggacacatttttaataattatattatgtaaACACAAACAATGCCAAGTGAATTTGAGTTTAGAAATGCAAATAAACATTAGGTTAAATAATAAAAGGTAAATgtactttttgtttaattttgggaAGAAATATGAACATAAATATGACCAATACATCCATTTAAATttctaaaaatgtctaaaatgtatgtatttttcctCCAGAATATCGTTACAACtttatattgcaataaatatCTTGTCCTCATATAATGGCGTCGTGTTCGTGTCAGAAAATTTCTTGACGACATTTTAAAAAACGCCAAAGATGTCAAAGATAAATTCTGTGTAATAGACTTtttagagaaacagaatattattgGGAGGAAGCAGCACCATGCTTTAGTGTCTTATGATGGAAtagttcatccacaagatggcgcttGGTGGCTCAGAAATCTCAACATTCCATTGCGCCGCATTCATTTGAAAAAAGAGACGTTTAATGAAGTAAGAATTTGTCGATTGAATACACAAAAGGTTGAACTTCCAAGTAGATTATTACAAATACGATCCATTACATGCTGTTAAAATGGTAAAACATAATTTATCTTTGTAAATCACTAACAGTGATTAGTCCAGCTTGTCTGCGTTGATAAAAGTAACACAGATCACGTGATAAATCCGTCATTTTACAAATAGTATAACAAATAGTTTACACGATATTaaagattttaaaagcatttgaatgcttttaaaataaaaatcacacccTGAAACACAcaaagaattaaatatttaatttgtatataaacacctgaccaatcagagagagCTTCCGGGCCACTATATTTTGCTTTGCTCTTCATTTGGTTTTGCCGCTCTAGTTTCGTGTTATTTTGCTGTGGCGGTCTGGCGGGAGTTTAGAACAGAGCCCGAGAGGGGGCGGTCTCCACGGTAACCATTTAAGCCGGAAGCTGCTGGGTACTCTCCAGCTAAGCAACaataacagataaaaacaaacgGAATCACTCTAAAATTTGTACTAAAATAAGCACATTCCGTTTATCGTCTCAGCATGTGACGGAAATCCAGATATTTATTAAAGCGAAGATTGACCGGCAGGTACCGGTGAGTCTGTGCGTGTGCACTGATTTATGTTTTGCCGTTTATAATATCAGATGACCTGACGAGTTTCTTTTTGCTAACCAAAGCTAAAATCATAATGTTGATGCTCAATTAGTAAGAGttaatgatgattataataacAATTTCAACATGTATCTCAAAATCTGTCTGCCTGTCAATTTTTATTCTGCCTGCCTGTCATGTTTTCTGCCTCAATGTGTTTCCTGctcatgtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgccactatctatctatttgtctgtctctgtctgtctgtctgtctgtttgtctgtccatccgtccgtctctatctgtctgtctgtgtgccactatctatctatttgtctgtctgtctctgtctctgtctgtctgtttgtttgtctgtccgtccgtccgtctctgtctgtctgtctgtctgtctgtgtgccactatatatctatttgtctgtctgtctgtctgtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgccactatctgtctgtgtctgtctgtccgtccgtccgtccgtctctatctatctgtctgtctttctgagTGTCTGTGTGggcctgtctgtctgtatatctgtctgcctttctgtctgtctgtctgtctgtctgtatgtgtgcctctgtctgtccgtccgtccgtccgtctatatctatctgtctgtctgtctggctggcTGGCTGTCTGTGTGggcctgtctgtctgtatatctgtctgcctttctgtctgtctgtgtgcctctgtctgtctgtttgtccgtccgtccgtccatctgtccgtctctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgccactatctatctatttgtctgtctgtctgtccgtccgtccgtccttctgtccgtccgtccgtctctatctatctgtctggctgtctgtcattatctgtctgtctgtctatctatctgtctgtctgtctgtctgtctgtctgagtgTCTGTGTGggcctgtctgtctgtatatctgtctgcctttctgtctgtctatgtctgtctgtctgtctgtatgtgtgcctctgtctgtctctatctatctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtatgtctgtatatctgcctatctgtctatctattgttCTTTCTGTCTATCATTTCATCCATATATTTTTTccagtctgtctatctgtctgtccatccgtccatatCTTTTTTTCCTGTCTAACTTGTGTGTCTATCTCTCTGTGTGtcagtgtgtctgtctgtccatctgtgtGTCCAGCGATGTCCAGGTCAGTGGTGTGTCCAGTAAGTGTCTCGGCGGCGGCTCCAGAGTCTCTGTCTGTCCTCCAGAGGCGTCTCCAGACAGCAGAGCAGCAGACAGAGGAGCTGGTGAGGACTCTGGGCAGCTTGGGAGCATCTGCAGATCAGCAGCATCTCCAGAACTCTGTAGGAACCCGTCCCATCAGTCCTGTGAACATTCAGCGGGCCCCGAGCGCCACAGGAGAGAGTTTGCTCTGGAGACAGTGTGAGACGCTGGTCGCTCGTGTGTGCAGATTGGAGAGTGTTTTACATGCTCTCAAACTCACGGCCTTCCGTCTGGAGACAGAGAGACAGCTCAACCCATCTCACCCTG

Function

GO:

id name namespace
GO:0070537 histone H2A K63-linked deubiquitination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0051289 protein homotetramerization biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0045901 positive regulation of translational elongation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042393 histone binding molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4153 Predicted to enable several functions, including cysteine-type peptidase activity; ubiquitin binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including histone H2A K63-linked deubiquitination; positive regulation of macromolecule biosynthetic process; and protein homotetramerization. Predicted to be located in nucleus. Orthologous to human USP16 (ubiquitin specific peptidase 16).

Ensembl:

ensembl_id ENSDART00000192112

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018610 lncRNA downstream 42110 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019234 lncRNA downstream 42298 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00019233 lncRNA downstream 215922 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019232 lncRNA downstream 927366 40358332 ~ 40360753 (-) False XLOC_009471
TCONS_00019235 lncRNA upstream 330101 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA upstream 332514 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00019236 lncRNA upstream 410711 41721051 ~ 41744848 (-) False XLOC_009486
TCONS_00018843 lncRNA upstream 743499 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00018655 lncRNA upstream 753843 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018608 mRNA downstream 53092 41172554 ~ 41235027 (-) False XLOC_009473
TCONS_00018607 mRNA downstream 53975 41169211 ~ 41234144 (-) False XLOC_009473
TCONS_00018609 mRNA downstream 53980 41178643 ~ 41234139 (-) True XLOC_009473
TCONS_00018599 mRNA downstream 1020634 40217256 ~ 40267485 (-) False XLOC_009470
TCONS_00018600 mRNA downstream 1041723 40220678 ~ 40246396 (-) False XLOC_009470
TCONS_00018616 mRNA upstream 1692 41312032 ~ 41333064 (-) False XLOC_009476
TCONS_00018617 mRNA upstream 6228 41316568 ~ 41332865 (-) False XLOC_009476
TCONS_00018618 mRNA upstream 10477 41320817 ~ 41523292 (-) False XLOC_009476
TCONS_00018619 mRNA upstream 38928 41349268 ~ 41382344 (-) False XLOC_009477
TCONS_00018620 mRNA upstream 38928 41349268 ~ 41382470 (-) False XLOC_009477
TCONS_00018590 other downstream 1218992 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3558953 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4413753 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 4754872 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 6075882 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018622 other upstream 83061 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 218920 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 967333 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 1218450 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 1418130 42728470 ~ 42728586 (-) True XLOC_009507

Expression Profile

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