RNA id: TCONS_00003304


Basic Information

Item Value
RNA id TCONS_00003304
length 690
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id XLOC_000945
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2239211 ~ 2251036 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGAGGCTCATTTCTGTGTGGGAGAATAAACTGACACGCTGAAAGGGTTTGATAAAGAGCAAAGCTTCTGAGCACACCGTATATCTGCACCTCCGTCTTCACACAGAGCGCTGATTTACCGTAAAGCGACGCGTCACCGCTGCAGTTGCCATGACAGCGCGCGCCGTGGCTTCAGGCGAATCTTGTCCTCCATAGAGCCGCGGTTTTTTCCTCTTCTGGTGTTGTTGATCACTGCAGGATCTCCGAGGAGGATGAAAGCTGATGCAGTGGGTGGTGTGAAATCTGCTGTCAAACCGCACTCATTCCAGCAGATATACTGTATGAACAGCATAGAAAACACCGCTAACACTGCAGCTCCGGACAAACGGCTGTGAGAGGTCTGcaggtgtgaatgtgtgtgggagGAAAGCAGAACAGATGAAATGTCACCCGCCGCCGCTGCATGGAGAAAAACACTATTTATAGTCTGAGAGACAGCAGGGACGCCTGGAGTCTGAGAGCTTGTGTCACATCCATGAACATATGCTGGATCTATGATCACAGTCACACTTTCAGCtgcaaacatgtgtgtgtgtgtgtgtgagtggaacAGATAGGGTAGAGTTCATTGTTATTGTGAATGCTGACATGATGTACATTGGGTTTGTACACCTTTTATGAAGCGCTGATGAAGAACAGCAATAAAGCCGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003303 lncRNA downstream 137950 2093996 ~ 2101261 (-) True XLOC_000944
TCONS_00003302 lncRNA downstream 142862 2093996 ~ 2096349 (-) False XLOC_000944
TCONS_00003301 lncRNA downstream 233676 2000666 ~ 2005535 (-) True XLOC_000940
TCONS_00003300 lncRNA downstream 233689 2000666 ~ 2005522 (-) False XLOC_000940
TCONS_00003299 lncRNA downstream 233699 2000666 ~ 2005512 (-) False XLOC_000940
TCONS_00002901 lncRNA upstream 243985 2495021 ~ 2502744 (-) False XLOC_000949
TCONS_00003305 lncRNA upstream 246837 2497873 ~ 2502743 (-) True XLOC_000949
TCONS_00001511 lncRNA upstream 453568 2704604 ~ 2714275 (-) True XLOC_000950
TCONS_00003306 lncRNA upstream 1045571 3296607 ~ 3299853 (-) False XLOC_000952
TCONS_00001519 lncRNA upstream 1054513 3305549 ~ 3309194 (-) False XLOC_000953
TCONS_00001504 mRNA downstream 163682 2074513 ~ 2075529 (-) True XLOC_000943
TCONS_00001503 mRNA downstream 177792 2060430 ~ 2061419 (-) True XLOC_000942
TCONS_00001502 mRNA downstream 187612 2048047 ~ 2051599 (-) True XLOC_000941
TCONS_00001499 mRNA downstream 344489 1888541 ~ 1894722 (-) False XLOC_000939
TCONS_00001495 mRNA downstream 353695 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001505 mRNA upstream 80601 2331637 ~ 2334254 (-) True XLOC_000946
TCONS_00001506 mRNA upstream 195960 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001507 mRNA upstream 195989 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001508 mRNA upstream 197015 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA upstream 199104 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001497 other downstream 311100 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other downstream 345206 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001493 other downstream 353611 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001492 other downstream 364093 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001486 other downstream 923458 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001513 other upstream 1046331 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 1046448 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 1046567 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 1046812 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001517 other upstream 1046970 3298006 ~ 3298088 (-) False XLOC_000952

Expression Profile

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