RNA id: TCONS_00019235


Basic Information

Item Value
RNA id TCONS_00019235
length 561
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id XLOC_009483
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41640441 ~ 41667355 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCTGTTGTATTGCCTATAGCGTCAACAACAGGTGCTCTTCGTTAGAGCTGCTAGCGACAGTTGGTTATAGTTTGTCGTACAGCAAACGTTTGACGCTTGTTAAAGAGCAAAAATGAGACGGCTAATctcttaaaactgtttttattaacCAAGATACAGAAAGTGCGGCGATGACCACATGAAGGAGCAATCTGGGTCGAGCGGATGTGTTATGAATGTGTGTGATCTTACTGCACTGCGGTGGAAATGCGGAGGTGACGAGAGCCCATAGTAGGAAACTGCCGAGAGTTGATGTAGGAAACTTTCCTCAGCGCGCCGTTCATCTGCTCCAGATCCTCAGCCTCCATCACCAGCACAGACTGAGCCGGATTCAGGCCTGTAGGCAGGAGATGATCTTCTGGCTTTCGATTTTTCCCGGTCGTATCGTCAGTCCAGACAAACTGCCtcgaaaatactgtgaaaactttgCTTTAGAGACCTCTCCACCtgtacacaacacaaacacacacctgctgtGAGCCAGAGCTGTCAAATCCTACTGATCTTATAATGTTAATCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018610 lncRNA downstream 394432 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019234 lncRNA downstream 394620 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00019233 lncRNA downstream 568244 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019232 lncRNA downstream 1279688 40358332 ~ 40360753 (-) False XLOC_009471
TCONS_00018602 lncRNA downstream 1280320 40357413 ~ 40360121 (-) False XLOC_009471
TCONS_00019236 lncRNA upstream 53696 41721051 ~ 41744848 (-) False XLOC_009486
TCONS_00018843 lncRNA upstream 386484 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00018655 lncRNA upstream 396828 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018656 lncRNA upstream 413039 42080394 ~ 42086212 (-) True XLOC_009496
TCONS_00019237 lncRNA upstream 438087 42105442 ~ 42106950 (-) True XLOC_009497
TCONS_00018618 mRNA downstream 117149 41320817 ~ 41523292 (-) False XLOC_009476
TCONS_00018628 mRNA downstream 117149 41454639 ~ 41523292 (-) False XLOC_009476
TCONS_00018627 mRNA downstream 117149 41454639 ~ 41523292 (-) False XLOC_009476
TCONS_00018631 mRNA downstream 117216 41498490 ~ 41523225 (-) False XLOC_009476
TCONS_00018632 mRNA downstream 137049 41499903 ~ 41503392 (-) True XLOC_009476
TCONS_00018635 mRNA upstream 3387 41670742 ~ 41689981 (-) False XLOC_009484
TCONS_00018636 mRNA upstream 3398 41670753 ~ 41677689 (-) False XLOC_009484
TCONS_00018637 mRNA upstream 10038 41677393 ~ 41689684 (-) True XLOC_009484
TCONS_00018638 mRNA upstream 26280 41693635 ~ 41708657 (-) False XLOC_009485
TCONS_00018639 mRNA upstream 30403 41697758 ~ 41700406 (-) True XLOC_009485
TCONS_00018633 other downstream 97001 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018622 other downstream 244368 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018590 other downstream 1571314 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3911275 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4766075 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018660 other upstream 610318 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 861435 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 1061115 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018678 other upstream 1984291 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018686 other upstream 2350078 44017433 ~ 44017563 (-) True XLOC_009524

Expression Profile

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