RNA id: TCONS_00018844


Basic Information

Item Value
RNA id TCONS_00018844
length 454
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_009499
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42148976 ~ 42149580 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAATTACAATAATGATATTGTTTTATGATTTTAGTGCAACACTCACTCTACAaacttttaaaaccattttgaggTGTCTTCACAGTGTTAGCTGGAGCATCGGccttttattttcacacattatGTGAGACTAGAAGAGAGATCACACCAAAGAAGAGGGCTGGTCCAGACTCGACATAACCAAAACCACTTCCTTTTCACTCATATCACCCGTTTTCTGTGGAGATCGCACAGCATTATTCTGGACTTGCAAATTTGAAACAACAAACATGAGGTTTGCTTTGTTTCTGAATGGACTCCTGCTGCTCTTTCTGCTTCCCGACCGGACAGAAAGTGTTGAATCCCTGGACATCACAACTCTTGCTCGCATTATCAACTTCTTCGAACAGAAGTAAGTTTTTTTACAGTATCTATTGAAAATGAAACCCTCAAAGTTAGCAGTTAGGAAGTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018657 lncRNA downstream 9140 42136087 ~ 42139836 (-) True XLOC_009498
TCONS_00019237 lncRNA downstream 42026 42105442 ~ 42106950 (-) True XLOC_009497
TCONS_00018656 lncRNA downstream 62764 42080394 ~ 42086212 (-) True XLOC_009496
TCONS_00018655 lncRNA downstream 82631 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018843 lncRNA downstream 90130 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00019238 lncRNA upstream 70003 42219583 ~ 42224315 (-) False XLOC_009501
TCONS_00019239 lncRNA upstream 70003 42219583 ~ 42224762 (-) False XLOC_009501
TCONS_00019240 lncRNA upstream 70003 42219583 ~ 42225535 (-) False XLOC_009501
TCONS_00019241 lncRNA upstream 70003 42219583 ~ 42225544 (-) False XLOC_009501
TCONS_00019242 lncRNA upstream 70003 42219583 ~ 42225670 (-) False XLOC_009501
TCONS_00018654 mRNA downstream 100954 42043102 ~ 42048022 (-) True XLOC_009493
TCONS_00018653 mRNA downstream 109784 41945310 ~ 42039192 (-) True XLOC_009492
TCONS_00018652 mRNA downstream 341605 41767675 ~ 41807371 (-) True XLOC_009491
TCONS_00018650 mRNA downstream 386411 41757442 ~ 41762565 (-) False XLOC_009490
TCONS_00018658 mRNA upstream 13776 42163356 ~ 42206890 (-) True XLOC_009500
TCONS_00018659 mRNA upstream 115311 42264891 ~ 42283830 (-) False XLOC_009502
TCONS_00018662 mRNA upstream 543875 42693455 ~ 42720384 (-) False XLOC_009505
TCONS_00018663 mRNA upstream 559529 42709109 ~ 42719796 (-) True XLOC_009505
TCONS_00018664 mRNA upstream 573546 42723126 ~ 42736433 (-) True XLOC_009506
TCONS_00018633 other downstream 605536 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018622 other downstream 752903 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018590 other downstream 2079849 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 4419810 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 5274610 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018660 other upstream 128093 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 379210 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 578890 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018678 other upstream 1502066 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018686 other upstream 1867853 44017433 ~ 44017563 (-) True XLOC_009524

Expression Profile

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