RNA id: TCONS_00003305


Basic Information

Item Value
RNA id TCONS_00003305
length 778
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_000949
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2495021 ~ 2502744 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAAGCGTTTTCACTGAATAAGCCGCAGAATTGTCCAGCAGACGGTGAAGTGTTGCTTGAGGCTGAGTGCTGCACACAACCTGCATTTACGGCCACAGAAGATGAAGACTTTCATTGGAAGTGACAAGAGAAGGTCCAGACGGATGGCTTTGCTTGAGATATGTGACGCTGCGGGGTTTGACTCAGATGGGGAATAGTTTGAACTTTTTACGTGCGAGACGCTCACAACAGGAGTCGGACCATACATGAAATGCTCTGCCGTGTCAACAATACCGAATGTAGGCCAGCCGAGAATTCCCAGCGACAACAAAGGTCCATCCTCCCGGTGCCATCTGCCACAGCCATAAAAAGGGAACCGGGGTGCGTGACAGACTGTTTTATTTGACTTGGAGGGGCTAATTTGGATTAGGGAGGATTTGTGTCCCTGCTGTGAGTCCGGGCCTGTTTGCGAAGCGTCTTGCGGAAAGTAGATGTGATGCGGTAGGTTCGCCGTTTGCCTCTCGATAAGATAAAACAGTAAGCCGGGGGGGAAAATCAGGGGGAAAATCGCATTTAAGCCAGTCTATTGAACTGTGGAGGTAAACAATGAGGATTTAGACCCAGACGGAGTAAAGATGAAACACCTCAAAGTAATATTTGCAGATTGCCTGTATCACAGAGCGCATATTGCAACCAGCGCTTTCCAAGCAGAACCTGCTGCCGACAAATGTTTGTCCAGTTCTGTGAATATGAAgacttttttatttctctttaatGATGGGAGTTTTGATATGAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003304 lncRNA downstream 246837 2239211 ~ 2251036 (-) True XLOC_000945
TCONS_00003303 lncRNA downstream 396612 2093996 ~ 2101261 (-) True XLOC_000944
TCONS_00003302 lncRNA downstream 401524 2093996 ~ 2096349 (-) False XLOC_000944
TCONS_00003301 lncRNA downstream 492338 2000666 ~ 2005535 (-) True XLOC_000940
TCONS_00003300 lncRNA downstream 492351 2000666 ~ 2005522 (-) False XLOC_000940
TCONS_00001511 lncRNA upstream 201861 2704604 ~ 2714275 (-) True XLOC_000950
TCONS_00003306 lncRNA upstream 793864 3296607 ~ 3299853 (-) False XLOC_000952
TCONS_00001519 lncRNA upstream 802806 3305549 ~ 3309194 (-) False XLOC_000953
TCONS_00001520 lncRNA upstream 802806 3305549 ~ 3330435 (-) True XLOC_000953
TCONS_00003307 lncRNA upstream 1342093 3844836 ~ 3846716 (-) False XLOC_000954
TCONS_00001510 mRNA downstream 40327 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 44688 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 44699 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001506 mRNA downstream 48478 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001512 mRNA upstream 597501 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001524 mRNA upstream 2851746 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 2860826 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 2947034 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 2947127 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001497 other downstream 569762 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other downstream 603868 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001493 other downstream 612273 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001492 other downstream 622755 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001486 other downstream 1182120 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001513 other upstream 794624 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 794741 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 794860 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 795105 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001517 other upstream 795263 3298006 ~ 3298088 (-) False XLOC_000952

Expression Profile

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