RNA id: CI01000206_00178241_00202393.mRNA



Basic Information


Item Value
RNA id CI01000206_00178241_00202393.mRNA
length 7018
RNA type mRNA
GC content 0.44
exon number 23
gene id CI01000206_00178241_00202393
representative True

Chromosome Information


Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 178145 ~ 203585 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTACAAATATGTCTTGTCAGGTTGACAGTCACTTATGAGCGTTTTGTCACAGTTTTGTGACTTTATGAGAAAGTTACTTCTCAACTCTTTGGAAACATGGAAGAGAGAAGTCTGATTCTCGAGGGTTTGCCGGATGATTTTGACCGTGTGAAATCAAAGGTTGAGCTTTATTTTAAAAATAAAAGACGATCAGGAGGAGAGATCGTGCAGATTCAAGAACATCAAGAGGACAAACGAAAAGCACTTCTTATTTATATGAACGAAGAAGATCTGACGAAGGTGCTTGACAAAAGAATCCATAAAGTTGATTTCAAACGTCATGGATCAGTTGAAGTGACAGTGAAACTACCAGAAGACACAAAAAGCAAAAAGATCAGACCACCAGTTCTGCCAAAGCCCAAGCTGGAGAAGAGCACTCTCCTCAAGTCACAGCCCACTCCTGCAAGCCAGGTCTCTGCAGTAAAACAGCCTGGAACAGAAATTAAAGGTCATAAAGACAATGAGGAGGATTCAGAAGTACCAGATCTTCTAATTACCACCCCTCGTCCAGTTGATAAGGACACACTTCAGATGTATTTTGAGCAGTTTGCAGAGCAATTTGAGCTAGCAAAGCATGGAAATAACAGCTGGATTCTGAAGCTCTACAGCCAATCAGATTTCAAGGAGATTTTTGGCAAGGAAGAACATGATTTTGGTGTATCTTTAAAAGTGTATAAAGACGGAAGTCTGGGAGAGAAGTCAGACCCCCGTCGCTTCATCTTGACTGGGTTTGATGGAGACACAGACCGCAAGATAATCTCAGTGTTCATTGGCAGCTGTAGCAAGACGACAGAACACACTTGGGAGACACTTGATGAAGATAGGATTGTTGTCACTTTTAAACAAGATATTGATGTGAAGTCATTTATAAAAAAATGCACTTCAAAGCAACTGTTGGGTCGAGACATCGGAGTGACGCGTTTGGAGCGAACGGATTCGATCCTGGTCCAGGGAGATTTGGAGAAGATCAGTGAAGAAATTCTCACCCTTTACTTCAGCAATAAGAAGAAGAGCAGAGGAGGAGAGATTGAGAACTTCATATGGATCAACAGACGAACAAGCGCAGTCATCACCTTTGAAAACTGTGATAATGCACATGCAGTGGTGGAACAAAAACACAATGTTTGCGGCACAGAAGTTCACACTTCACTGTTTTACTCAAGTTTGCAAAAGGCTTTAACTGGAGAAAAACCAACCCTGACTGATACCATCACAAAAGTCAACATTTCTGTCAGTGAAGATCTACTTCGTTTCTTTGAAACCAATGAGGGATGTAGAAAACAGCTGGAGAGTGATGCCAAACTGTTTCATGCCAAAGTTCTTATTGACAGCACTGCAGCACCAAGTGAAATTATACTGGAGATGGACGTCAACAAAGAGTCCCTGGCTGCACTGCTAATTGCACCCACTTGGGAGTCCAAGACAATGAGGGAAGTTCAATCCTTTTTGAGCAGATACGCTACAGAAGAGCTGCCACTGGACGAGGACGTCTGGAAGAGAGTTGAAAACGACTGTGACGGTCTCCTCACAGTTGATACAGCGCTCTTCTACAAGGAGCGCAACTCTAAAGTTGTAATTACTGGAGTGAAAGAGCAGGTCAGGATCCTTTCGGACAAGATCAGGACACTCCTGAAGAACGCTACTGTTGAGGTGGAAGTGGAAAGAAACACGATCGAGGCAACAATTCAACTAGACTGCAAAGAAACATTTGATCTAATAAAAGAGCGTGTGCAGTCCAAATTAGGGGAGGTGAGTTTATCCCATGATGAGAATAAGCACATAATATCTCTCAGAGGTCTGAAGGACAAAGTAAACTCAGTGGAGATGTTCATCAAAGACGCACAGAAGAACATAATCACGCACCAGCTGAACCTATCTTCTAATCTGATTCACTTTCTAAAGTCACTGGATCTTCAGAAGTTTGAGCAAGACAACCACATTCCAGCTAGACTTCTAAACCGAAAGGATTTTTTTGGGATCTTGGTTGAGAAAGTAAACCTGAAGAGAGCTGAAGACAAAATCGGTGAGATTCTCAAAGAGGAGGTTATACAACTTCCTCCCAATCAAACTGGAGAAGATTGGACATGCTTTCTCAGGAATCTGCAAGATGAAGAGTCATTTCAGAAAGCCAACGACATCAGGATCACACAATCAAACATGCAGGTTACAATATGTGGGTTTTCTAATGCAGTTGCAGATGTTTCAGGAAAAGTGAGGAGATATCTGGAGAACAAGGAACCAACGACTGAGAACGTCCCTCTCAAATCTGTGCGAGAGGTCGAATTTGTCGACTCCTGCCTGAATCTGTCTGAACTCCCTGAACTCAAGCGGCTTGGTGCAACGGTACTTGCTTACAGAGCATCAAATTCTCCTTGTCTGAAGGTCACGGCAGCTAAAGACAACATTAAAGATGCCGTGGGTGTTGTACAGAAGCAGTTGTCATCAATTGTCGTGGAGAAGCATAAGTATTGCAAAGCAGGAGAAGCGAAGGTTCTGGAGAAGCACGAAGCCAATGTGAAGACAAAAGCCAGAGAGAAGCAGTGCAGCCTGTATTTATCACAAGAGCAAATGGTTACATCCGGCCCTCCGAAGAGCTTCACACACAAAATAGGCAATTTGATGACTCTGAGCATCATAGAGGGAGACCTGCAGCATTTTACAGCCGACGCTTTGACCTGTCCGATGAATGCCAATCTCAATTTCAATAACCCTGTGGCTCAGCGCTTTCTCCAGTTTGGAGGCGACAAGATTACAGAAGTGTGTAAAACTCCCCAGAAAGAAAAGCAGTCTCTTCTGCCTGGAGATGTGCTGCTCAGCGATGCTGGAAAACTCAGTGCCGGGACGCTCATTTATGCAGTGCTCCCGCAGAAAGGTCAGACGCTGGACTCGCACTACCTTCAGTTGGCCGTGCATAACAGTCTCCTGAGAGCCGAGAGGAAAGGATGCGCCTCCATTGCAATGCCAGCAATCGGTTGTAAAACTTTTGGATTCTCTGTTAAAGAAAGTTGCATGGCACTTCGAGCAGCTGTACTGCAGTTCTGCGCCGACCATCAGAATTCACCTACGAATATTAGAAATATCAGTGTAGTGGACTCAGATGAGAAGATCATTGAGGAGTACGACGCTCTGATCCAGGAACTAGGATTTCCTGACATGTCAACAAAAATCTCCCAACCATCCTGGAAGCTTAAACACGGATCAGACAAAAGAGTGCTGATCAATGGTGTGCCGATATGCCTCAAAAAGGGTGACATCACCACAGAGACAGTGGACGTCATTGTGAATTCAACAAACACAAGTTTAGATCTTAACACCGGCGTTTCTGGTGCCATCTTAAAAGCTGCGGGACAATCTGTTGTTGACGAATGCAAAAAGCAAGGTGCAGCAGTGATGACGGGCGCTGGAGCGCTTCAGTGTAAGAATATCGCTCAAATGGTCGGGCCGGGGAACGTCGCAGACATCACAGCCTCTCTGGGGAAGGTTTTGAACCTCTTCAAAATCGGAAGCGTCAGAATTGAGGTAAAGAAAGGTGACATCACTAATGAAACTGTCCGAGGGATTGTAAACACTACCAACAGAGACATGAGCCTGAGAGGAGGTGTATCGGGTGCCATATTTAAAGCAGCGGGAGCGTCTGTGGAGCAGGAGTGTAAAAAACACGGTTCGCTCCAGAATGACGTCGCAGCCGTGACCAGCGGTGGGAACCTGCACTGTGATGTCATCATTCACATGGTCGGCCCGCACGCGGCCGCAGAGGTCAGATCACGCGTGAAGAATGTTCTGGAGCGCTGCGAGGAGAAGCAGATCACCACGGTCTCCTTCCCTGCCGTCGGCACTGGTGGAGGAGGAGTTCAGGCTGCGGATGCCATCGCTGCCATGCTGCAGGCCTTTGAAGATCATCTGACTCCAAACGTCTCAACCGTGATCAAGCTCATCTACATTGTGATTAACCAGGACGATGTCCTGCAAGAGTTTCAGAAAGCAAACCCAATGGAGGTGACAATGGGCCCAATTAGAGTCAAGGTTTGTAGTGGTGACATCACCAAAGAGACCGTTGAGGCCATTGTTAACAGCACCAACACAAGCCTCGATCTGAACTCAGGTGTATCAGGAGCCATTCTCAAAGCGTCAGGACAAACAGTGGTGAACGAGTGCAAAACAAAAGTGCCTCAGCCTGCCGATGGCGTGATCTTGACCAAAGCAGGAAAGCTTTCAAATATCAAACACATCGTTCATATGGTTGGGCAGACCAGTGAGAAAGGCATCAGCAGCTCTATGTATAAAGTTCTGAGGTTGTGTGAAGAAAACCACATTCAGTCAGTCTCATTCCCAGCTCTTGGAACGGGAGCTGGAAACTTGGCAGCAGCAGGAGTCGCTAATGCAATGACTGAAGCTCTGATGAAATTCATAAAGGACTCACCGAAACATCTGAAGCACGTCCACATTGTGATCTTCCAAGCGAAACTGCTGCCTGACTTTCAGGAAGCTGTCAAGAAGTGCAAGAAGATTTCTCGGAATGCTTCTGTACGTCAGCAGCCACCGGTGAGCCGGACTCAACTACCTACCTCAACTACTCAAATTTTTTGTCTAGCCAAAGAAACGGCTGCTGTGTCGTTCCCCGTTATGTCGGTTGACGTTTACGGAACGTCCCATACAAACCTGGCCGAGGTCAAGAGACACCTGGATGAACTGATCTCTGATGAGTGCATCAGTAAAGACGTCCAGTCGAGACACATCGCCGACCTTCTTGAAACAGACAAGAAGGCCATCGTGAGCCTCAGCCGAACCAATCAGGTCAGCGTTCTGGTGACCAGTCTAGATAAGTTAACAGTATCAGGGAAAAAAGACGATGTCTTGGATGCCGTGCTGAAGATAAACGGGTTCATCCAAGCAGCGCGAGACCGAGAGATGCGAGCAGGTGAGGTGAAGCGTCTGCGGGAGACGTTGTGTTGGGAGCGGGCCCGAGGAGATCTCTGGGAGCCGCTGGATCCCGCCGTCAGCTACGACATCGAGCTCGCCTACCACACCAAGCAGAAGAGCTTTCAGTACCAGGAGAATGGCGAGAGCTACACGGTGGACTTCAGCGAGAAGAAGCTCACGAACAGCAAGCAGGAGTCCTGCAGGATCAAGAGGACTCTGCTGGGAGATTCGGATACGGCAATCATTCATCCTCCTCCAACATGGACCAAAATGGATGGACGGGATTTAGAAATAATCACCTTACAATCAGATTCAGAGGAGTACAAGAAGATAAAAACAGCCTTTCTGAGCTCCAGTATCCACCCTGACGTGTTACCCGTACAGGTTGAACAGATTGACAGGATTCAGAATCAGTCCCTGTGGCAGAGATACTGTGTGCTGAAACAGGGCGTGGATAAGAAATATCCCAAACAGACAAACGAGCGCAAGCTTTATCACGGAACGACCAAAGACATATGCCAAAAAATCAACAAGAATGGCTTCAACCGAAGCTTCTGTGGGAGAAACGCGGTCGTTCACGGAGACGGCACATACTTCGCTAAAGAGGCCTGGTACTCCTGCCAGGATCAGTATTCCAACCCAGACGACAAAGGGCTGAAGTACATCTACCTAGCGCGAGTGGTGACGGGGAACATGTGTAAGAGCAGACAAGGAATGAAGGAGCCGGATCCTATCAACCCTGCTGACCCACGGGCCGGTCTGCACGACTGCGCTGTGGACAGCCTACAGAACCCGTTCATCTTTGTGGTGTTCTGTGACGCAGGAGCGTATCCAGAGTACCTCATCACCTTCAAATCTAAATTCTGAATGCACTCAGATCTCTATCTGACAAGCACATGACCAAGTTTACAAACTCTGATGACAGACGGACAGACAGATAGATGGGTGTCTAGATGACTTTGACCTTGTCACAAATATATTACCAGGACAAACACAAGAACAAATGTTTTCAGATGCAACTTTTATCAGTAGCGCTGTCTATCACCAAAACACAACAAAACAAAAAACAACAATCACTAAATTAATTGGTAACAACTTATAATAAGGTCATATTTGTTAACTAATTAATGCATTAACTAACATGAACGATATATTTTTTACAGCATTTATTAACCTTTGTTAATGTTAAATGTTCATGTTAGTTCAAAGTGCATTAACTGATGTCAACAAATACATTTTTAAGATTAATAAATCCTGTAGAAGTATTGTTCATTGTTAGTTCATTTAAGCGTATTAAATATTACCAGATACAACTTTTGATCTTAAAAATGTATTAGTAAATGTTGAGATTAACATTTAAGATTAATAAATGCTTTAGAAGTATTTTTCATTGTTAGTTTCCTGTTAACTAATGTTAACAATTTTGTAAAGTGTAATGGTGAATATATTCATCATAACTGCCCATCAGATGATCACTGAACTCTGTGATCCGTTCACACACAACACATTGTTGTGTTTGGACATTTTTAAGACTTGTTATTATGATTATCCCTTTGTCACAATATTTTAATAATTAATCATATAGGTAACATATAGACCACCTGTAGTCAATAATTTTATCCCTTAAAAACAAAATTACATATTTTCCTTGAAAAAAAAACTTCATTCCTTAAAATAGCTTGAATGTAACTCGACACCCTTGCCTCATTTAGTATACACAGTTCTATGAATATGCAAAATAGCCCCGCCTCCACTCACTCACACCAGCTCAGAGATCCACTCGATCACACGTTGACGTGATTGGTTACAAGATAGTTTATGACGTCAGAAACACCAGCAATTTCAACTTTTTGAGACTGTCTTTGGATCACTGCAGTTTTAAGAAGAAAACACTCGGCAATGGTGTCGACTTATGAATTTGCACATGGTTTATCTTAAACTTGATTTTCACCACAGGGGGCCTTTAAATCAACAGCCCTACAGAAGGTTTTTCAGTGTTTTAATCATTCTGAATGTATGAAGGATTGATTTAGTCTGTATCTGAAACTTTTTAACAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU446081 lncRNA upstream 19236 157555 ~ 158909 (+) True G389642
TU446031 lncRNA upstream 31937 142077 ~ 146208 (+) True G389597
TU446068 lncRNA upstream 43568 99628 ~ 134577 (+) True G389632
TU446058 lncRNA upstream 107991 69585 ~ 70154 (+) True G389623
TU446028 lncRNA upstream 123780 54138 ~ 54365 (+) True G389594
TU446097 lncRNA downstream 91898 295483 ~ 295961 (+) True G389658
TU446111 lncRNA downstream 123376 326961 ~ 327166 (+) True G389672
TU446123 lncRNA downstream 140203 343788 ~ 344204 (+) True G389684
TU446174 lncRNA downstream 301932 505517 ~ 505814 (+) True G389728
TU446199 lncRNA downstream 307344 510929 ~ 511157 (+) True G389753
CI01000206_00029745_00051502.mRNA mRNA upstream 126224 29745 ~ 51921 (+) True CI01000206_00029745_00051502
CI01000206_00021515_00023628.mRNA mRNA upstream 154512 21515 ~ 23633 (+) True CI01000206_00021515_00023628
CI01000206_00220974_00253610.mRNA mRNA downstream 17389 220974 ~ 253610 (+) True CI01000206_00220974_00253610
CI01000206_00385497_00393583.mRNA mRNA downstream 181912 385497 ~ 393583 (+) True CI01000206_00385497_00393583
CI01000206_00426915_00452327.mRNA mRNA downstream 223209 426794 ~ 453106 (+) True CI01000206_00426915_00452327
CI01000206_00475810_00481198.mRNA mRNA downstream 272225 475810 ~ 481222 (+) True CI01000206_00475810_00481198
CI01000206_00537962_00541275.mRNA mRNA downstream 334304 537889 ~ 542150 (+) True CI01000206_00537962_00541275
TU446214 other downstream 357560 561145 ~ 565669 (+) True G389767
TU446171 other downstream 376246 579831 ~ 583898 (+) True G389725
TU446222 other downstream 402750 606335 ~ 608065 (+) True G389774

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073722 False 2810 mRNA 0.58 16 NC_007120.7 56443416 ~ 56456419 (+)