RNA id: CI01000206_00426915_00452327.mRNA



Basic Information


Item Value
RNA id CI01000206_00426915_00452327.mRNA
length 2718
RNA type mRNA
GC content 0.45
exon number 16
gene id CI01000206_00426915_00452327
representative True

Chromosome Information


Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 426794 ~ 453106 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATATAAGCTAGTAAAAGCAACATAAAACAGATTAATGATGTTATGATCACCAATTGGGACATATAGAATATACAGGTAAGTTGATGTGTTGGTAAGAACATCTGTCTCAGGAGGTGAGAATGGTTCACACCTGGACTGATTGTGATCAAACACTTGGGTTTATGGATCATTATGAGGTGATTCGGCGGGTCGGTCAGGGCGCGTTCGGGAGCGCGCTTCTGGTCAAACACCGACACGGAGACGATCCGCTGCTCTATGTCATCAAAGAGATCAACCTGAGACGGATTGTCGACTGGTTTGTTCAGATCTGTCTCGGACTGAAGCACATTCATGACAGGAAGGTCCTGCACAGAGACATTAAATCTCAGAACATCTTTCTCACTCAAGGAGGACTGAAAGTCAAACTGGGAGATTTTGGCATCGCAAGAATGTTGAACAACACCATGGAGCTCGCCAGAACCTGCGTTGGGACGCCGTACTATCTGTCTCCAGAGATCTGCGAGAACAGACCTTACAACAACAAAACGGACATCTGGTCTCTGGGCTGTGTCCTCTATGAGCTCTGCACACTGAGACATCCGTTTGAAAGCAGTAATTTAAAGCAGCTGGTGCTGAAGATCTGTAGGGGGCGCTACAGTCCAGTGTCTCAGCGCTACAGTAATGAACTACAACTGCTGCTTAACCAGCTGTTCAAGGTCAGTCCACGTGACCGGCCGTCGGCTAACTCGCTGCTCAAACGACCTTTACTACAGCCTCTGATCAGCAAACATCTGGACACACAGCAAATAAAGCCTCATTTTCCTGCTGTGGTTGAAAACCCGATTCCACTCAAACTACGTGTTGATCATGAGCGGCGGTGGAACGGTCCGGCCGAGCCGAACGAGCGTCAGGACCGACAGCAGGAACCTGCGGATCACGACGCACACAGACCCGCTGCGCTGGAGCCCCACAAAATCACAGACTGTGTGAAATCATTGATCATTTCTGGTGTTCAGGGTATCAGACCGTCCACAGCAGATGCTGAAGGCTGTCAGCCGGCCAACGCACAAGAGCATTATGGGAGCAGACCGCCTCAGAGAGGGAAACTACAGGGACAGGAGGAGTATCTGAAGCAGCTCCAGCGAATCAGAGAGCAGTATCATCATGATGTCAGAGAGATGAGAATGAGAGCAGAGGTCGAGGACAGAGGAGCAGACTTACTGAAGAAGAACAGAGACACACGCACACGTGGGAAAGAGCAGCAGAGAGGAATCATGTTCGAGATCAAGCTGAGTGATAAAGAGATGAAGACTGATGAGGAAGATGAGGAGTCAGAGGATGAGCCCCTGAACGACACACTGACGTTTGCACAAGGAGAAAACCTCCGCCACCGTCCACACGGCTCAGAGGAAGAGGCTCGGGTGAAGAGAGGCGAATGGTGTCGAGACGCCGCTGAGACCTTACTGAGCGCTCTGGAGCACATGGATGTGACGACGGAGAGCGTCTGTGACGCTCAGACAGAGGAGCAGGAGGAAGGAAACAGAAAACACTGGACGAAGCGTCTGCCGGAGACACTCCTGAACGCTCTCGCTCAAGCGCAGATCACCGACTGCAGCACAGAGACGCTGATGTCATCAGATGAGAAGCGTCTGACAGAGGAAGAGCGTGATGAAGATGAGTGTGATGAAGATGTGGATGAGGAGCGTTTGGAGCCTCGATCAGATGATGAGGACACGAACTTTGAAGAGTCTGAGGACGAGCTGAGAGAGGAGGTGTCCGACTCCATGAGGAACCTCCTCATCATCACACAGGAGGAGGACGAGCCGACGCACACGGATGGACCGACACAGGAAACACAGGAGGAAGCGACCAGCAGTGTGGAGGAAGTGACTGACAAGAGTGTGTTTCAACTGCCTTTTACTGCACATGATGATTACCAGAAAAACACAGTAGAATGAAGGGATTTTCTTTTCATTTTCTTTCTTTTTGTTCCTCATTCAAGTACGTCTAAGTGAGATCAAGCTTTTTCTGTAGCTGCTGCTAGAACAGTTTACCTTTTAACATCAGCACCTCTTGAATGTTTTTATATATTCACACACTACCGGTCAAAAGTCTGGAATAATCAAATTATTTTATTGTTTTTGAAAGAAGTGTCTTCTGCTCACCAAGGCTGCATTTATTTGAGCACAAATACAGTGAAAAGTATGATATATTATTACCATTTAAAACAGCTGTTTTCTATGTGAATATATAGTAAAGTGTAATTGATTCCTGTGATCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATCATTTGCAGCTCAAGAAACATTTCTGATTATTTTCAGTGTTGAGCCGCTTCAGATTTGTGTTCAGACAGATGTTTCTCATTTAAACTTCAGAAGAAACTACTGAATTTACTGAGTCAGAGTGGGTTTGATTCATTGAAATTGATTCATGAACATGTTCATTCACATCATCACTGAAATCATGTGTCAATTTCATATATTAAAACGTTTTAATATATGATGGTAAAGACTGCTGTTCATGACTGTGTTATATTGGTGATGAATATAAATGAAAATGACTAAATATGATTCATGTGTTCATTTAGTGAAGAAATCATGATTATTTGAACTAGATTTTTTTTACTGTATTTTACTTCTTACATAAAACATTTTGAATCTAGCTTACAGTAAATAGAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU446123 lncRNA upstream 82590 343788 ~ 344204 (+) True G389684
TU446111 lncRNA upstream 99628 326961 ~ 327166 (+) True G389672
TU446097 lncRNA upstream 130833 295483 ~ 295961 (+) True G389658
TU446081 lncRNA upstream 267885 157555 ~ 158909 (+) True G389642
TU446031 lncRNA upstream 280586 142077 ~ 146208 (+) True G389597
TU446174 lncRNA downstream 52411 505517 ~ 505814 (+) True G389728
TU446199 lncRNA downstream 57823 510929 ~ 511157 (+) True G389753
TU446205 lncRNA downstream 73991 527097 ~ 527755 (+) True G389759
TU446210 lncRNA downstream 101955 555061 ~ 555276 (+) True G389764
TU446175 lncRNA downstream 139199 592305 ~ 592887 (+) True G389729
CI01000206_00385497_00393583.mRNA mRNA upstream 33211 385497 ~ 393583 (+) True CI01000206_00385497_00393583
CI01000206_00220974_00253610.mRNA mRNA upstream 173184 220974 ~ 253610 (+) True CI01000206_00220974_00253610
CI01000206_00178241_00202393.mRNA mRNA upstream 223209 178145 ~ 203585 (+) True CI01000206_00178241_00202393
CI01000206_00029745_00051502.mRNA mRNA upstream 374873 29745 ~ 51921 (+) True CI01000206_00029745_00051502
CI01000206_00021515_00023628.mRNA mRNA upstream 403161 21515 ~ 23633 (+) True CI01000206_00021515_00023628
CI01000206_00475810_00481198.mRNA mRNA downstream 22704 475810 ~ 481222 (+) True CI01000206_00475810_00481198
CI01000206_00537962_00541275.mRNA mRNA downstream 84783 537889 ~ 542150 (+) True CI01000206_00537962_00541275
CI01000206_00571550_00572992.mRNA mRNA downstream 118444 571550 ~ 573289 (+) True CI01000206_00571550_00572992
CI01000206_00666815_00743152.mRNA mRNA downstream 213709 666815 ~ 743152 (+) True CI01000206_00666815_00743152
CI01000206_00748542_00751311.mRNA mRNA downstream 295436 748542 ~ 751571 (+) True CI01000206_00748542_00751311
TU446214 other downstream 108039 561145 ~ 565669 (+) True G389767
TU446171 other downstream 126725 579831 ~ 583898 (+) True G389725
TU446222 other downstream 153229 606335 ~ 608065 (+) True G389774

Expression Profile