RNA id: TU446068


Basic Information

Item Value
RNA id TU446068
length 516
lncRNA type read_through
GC content 0.44
exon number 2
gene id G389632
representative True

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 99628 ~ 134577 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAGACCATTCACAGCATTTGATAGCAATCATAAACGTTAGCCTGGTGTGTATGGCTCTGTTTGGCAAACAGGTGCGCTATGTATAGTGGGCGTCCATACGGGTTTTGCACAAAAGATTAACATGACGACACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACTTAAATTTATCCACTAACCATTCAGAAACGTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAGTGTAAGGCTGAACACTTTCGTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAATGGCATGTTTTTCCTCACAACCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCAGACGCATACTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446058 lncRNA upstream 29474 69585 ~ 70154 (+) True G389623
TU446028 lncRNA upstream 45263 54138 ~ 54365 (+) True G389594
TU446031 lncRNA downstream 7500 142077 ~ 146208 (+) True G389597
TU446081 lncRNA downstream 22978 157555 ~ 158909 (+) True G389642
TU446097 lncRNA downstream 160906 295483 ~ 295961 (+) True G389658
TU446111 lncRNA downstream 192384 326961 ~ 327166 (+) True G389672
TU446123 lncRNA downstream 209211 343788 ~ 344204 (+) True G389684
CI01000206_00029745_00051502.mRNA mRNA upstream 47707 29745 ~ 51921 (+) True CI01000206_00029745_00051502
CI01000206_00021515_00023628.mRNA mRNA upstream 75995 21515 ~ 23633 (+) True CI01000206_00021515_00023628
CI01000206_00178241_00202393.mRNA mRNA downstream 43568 178145 ~ 203585 (+) True CI01000206_00178241_00202393
CI01000206_00220974_00253610.mRNA mRNA downstream 86397 220974 ~ 253610 (+) True CI01000206_00220974_00253610
CI01000206_00385497_00393583.mRNA mRNA downstream 250920 385497 ~ 393583 (+) True CI01000206_00385497_00393583
CI01000206_00426915_00452327.mRNA mRNA downstream 292217 426794 ~ 453106 (+) True CI01000206_00426915_00452327
CI01000206_00475810_00481198.mRNA mRNA downstream 341233 475810 ~ 481222 (+) True CI01000206_00475810_00481198
TU446214 other downstream 426568 561145 ~ 565669 (+) True G389767
TU446171 other downstream 445254 579831 ~ 583898 (+) True G389725
TU446222 other downstream 471758 606335 ~ 608065 (+) True G389774

Expression Profile