RNA id: TU446097


Basic Information

Item Value
RNA id TU446097
length 479
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G389658
representative True

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 295483 ~ 295961 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTATCAAAAAAATGTTCAACTTTGTCCTTTGGATAGCTATAGCAGGGTCATTTAGAAAATAGGCGTGGCCAAGTCTACCCAAAAGCCTATCATTCCTAAACGAAAACTCAGAACTTCGCATCATTACGTGAGCACATGCGGCACATGATTCTAAAGAAGCATGCATACTTTTATGGAGATCGGCCCATAGGCGGTGCTATAACTTTTAAAAAGGTGTAAAAACTATGTATTTCTATGCCAAATCCCATAAAATGGCTGAAAGTGGTCCTCTTCCTGCCTGATTAGTGTAGAACTTCTTGAAATTGGGTGTGCATATCTGTCACGTGATTCTAAAGAAGCGTGGAAACTTTAATGGGGGCGCCTTCGCGTTTTTCAAGTTTGCAAAGAATAGTGTATCATGCAATTTTTCACACACGCCTACGGCATTCGTACCACATGGTAGAACTCCTCATTCTGAGCAACTTTGCCTCTAGCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446081 lncRNA upstream 136574 157555 ~ 158909 (+) True G389642
TU446031 lncRNA upstream 149275 142077 ~ 146208 (+) True G389597
TU446068 lncRNA upstream 160906 99628 ~ 134577 (+) True G389632
TU446058 lncRNA upstream 225329 69585 ~ 70154 (+) True G389623
TU446028 lncRNA upstream 241118 54138 ~ 54365 (+) True G389594
TU446111 lncRNA downstream 31000 326961 ~ 327166 (+) True G389672
TU446123 lncRNA downstream 47827 343788 ~ 344204 (+) True G389684
TU446174 lncRNA downstream 209556 505517 ~ 505814 (+) True G389728
TU446199 lncRNA downstream 214968 510929 ~ 511157 (+) True G389753
TU446205 lncRNA downstream 231136 527097 ~ 527755 (+) True G389759
CI01000206_00220974_00253610.mRNA mRNA upstream 41873 220974 ~ 253610 (+) True CI01000206_00220974_00253610
CI01000206_00178241_00202393.mRNA mRNA upstream 91898 178145 ~ 203585 (+) True CI01000206_00178241_00202393
CI01000206_00029745_00051502.mRNA mRNA upstream 243562 29745 ~ 51921 (+) True CI01000206_00029745_00051502
CI01000206_00021515_00023628.mRNA mRNA upstream 271850 21515 ~ 23633 (+) True CI01000206_00021515_00023628
CI01000206_00385497_00393583.mRNA mRNA downstream 89536 385497 ~ 393583 (+) True CI01000206_00385497_00393583
CI01000206_00426915_00452327.mRNA mRNA downstream 130833 426794 ~ 453106 (+) True CI01000206_00426915_00452327
CI01000206_00475810_00481198.mRNA mRNA downstream 179849 475810 ~ 481222 (+) True CI01000206_00475810_00481198
CI01000206_00537962_00541275.mRNA mRNA downstream 241928 537889 ~ 542150 (+) True CI01000206_00537962_00541275
CI01000206_00571550_00572992.mRNA mRNA downstream 275589 571550 ~ 573289 (+) True CI01000206_00571550_00572992
TU446214 other downstream 265184 561145 ~ 565669 (+) True G389767
TU446171 other downstream 283870 579831 ~ 583898 (+) True G389725
TU446222 other downstream 310374 606335 ~ 608065 (+) True G389774

Expression Profile