RNA id: TU446123


Basic Information

Item Value
RNA id TU446123
length 417
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G389684
representative True

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 343788 ~ 344204 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGTCATGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACATCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACTCCGTTACTGACAATCCTCATTTTGGCTGTGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCGACCGAAGCGCGAGCCGTTAAAGCTCCTCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446111 lncRNA upstream 16622 326961 ~ 327166 (+) True G389672
TU446097 lncRNA upstream 47827 295483 ~ 295961 (+) True G389658
TU446081 lncRNA upstream 184879 157555 ~ 158909 (+) True G389642
TU446031 lncRNA upstream 197580 142077 ~ 146208 (+) True G389597
TU446068 lncRNA upstream 209211 99628 ~ 134577 (+) True G389632
TU446174 lncRNA downstream 161313 505517 ~ 505814 (+) True G389728
TU446199 lncRNA downstream 166725 510929 ~ 511157 (+) True G389753
TU446205 lncRNA downstream 182893 527097 ~ 527755 (+) True G389759
TU446210 lncRNA downstream 210857 555061 ~ 555276 (+) True G389764
TU446175 lncRNA downstream 248101 592305 ~ 592887 (+) True G389729
CI01000206_00220974_00253610.mRNA mRNA upstream 90178 220974 ~ 253610 (+) True CI01000206_00220974_00253610
CI01000206_00178241_00202393.mRNA mRNA upstream 140203 178145 ~ 203585 (+) True CI01000206_00178241_00202393
CI01000206_00029745_00051502.mRNA mRNA upstream 291867 29745 ~ 51921 (+) True CI01000206_00029745_00051502
CI01000206_00021515_00023628.mRNA mRNA upstream 320155 21515 ~ 23633 (+) True CI01000206_00021515_00023628
CI01000206_00385497_00393583.mRNA mRNA downstream 41293 385497 ~ 393583 (+) True CI01000206_00385497_00393583
CI01000206_00426915_00452327.mRNA mRNA downstream 82590 426794 ~ 453106 (+) True CI01000206_00426915_00452327
CI01000206_00475810_00481198.mRNA mRNA downstream 131606 475810 ~ 481222 (+) True CI01000206_00475810_00481198
CI01000206_00537962_00541275.mRNA mRNA downstream 193685 537889 ~ 542150 (+) True CI01000206_00537962_00541275
CI01000206_00571550_00572992.mRNA mRNA downstream 227346 571550 ~ 573289 (+) True CI01000206_00571550_00572992
TU446214 other downstream 216941 561145 ~ 565669 (+) True G389767
TU446171 other downstream 235627 579831 ~ 583898 (+) True G389725
TU446222 other downstream 262131 606335 ~ 608065 (+) True G389774

Expression Profile