RNA id: TU446174


Basic Information

Item Value
RNA id TU446174
length 298
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G389728
representative True

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 505517 ~ 505814 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGGAAATTTTCATTTTGAAGTGAACTAATCCTTTAACTAAGAGTAATAATTGCTTAGAATCAGTGTTAACTAATGTTCACAAATGAAACCTAATTGTAAAGTGTGACCAGTAAAGCTGAACTGAGGTCAGTGAACTAAAACACTCTCAGATCAATGTGGCTCAGCTGCACGAGGCTTCGGTTCACGACATCCTACATTAAAGCATTCAGTGAGGGGAGTCCAGCTCACCCCAGCGGCATCATGGGATTTTATAGATGTCACATTGGAAAAAAATGATGTTCTTCCTCAGTGTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446123 lncRNA upstream 161313 343788 ~ 344204 (+) True G389684
TU446111 lncRNA upstream 178351 326961 ~ 327166 (+) True G389672
TU446097 lncRNA upstream 209556 295483 ~ 295961 (+) True G389658
TU446081 lncRNA upstream 346608 157555 ~ 158909 (+) True G389642
TU446031 lncRNA upstream 359309 142077 ~ 146208 (+) True G389597
TU446199 lncRNA downstream 5115 510929 ~ 511157 (+) True G389753
TU446205 lncRNA downstream 21283 527097 ~ 527755 (+) True G389759
TU446210 lncRNA downstream 49247 555061 ~ 555276 (+) True G389764
TU446175 lncRNA downstream 86491 592305 ~ 592887 (+) True G389729
TU446217 lncRNA downstream 91101 596915 ~ 597114 (+) True G389769
CI01000206_00475810_00481198.mRNA mRNA upstream 24295 475810 ~ 481222 (+) True CI01000206_00475810_00481198
CI01000206_00426915_00452327.mRNA mRNA upstream 52411 426794 ~ 453106 (+) True CI01000206_00426915_00452327
CI01000206_00385497_00393583.mRNA mRNA upstream 111934 385497 ~ 393583 (+) True CI01000206_00385497_00393583
CI01000206_00220974_00253610.mRNA mRNA upstream 251907 220974 ~ 253610 (+) True CI01000206_00220974_00253610
CI01000206_00178241_00202393.mRNA mRNA upstream 301932 178145 ~ 203585 (+) True CI01000206_00178241_00202393
CI01000206_00537962_00541275.mRNA mRNA downstream 32075 537889 ~ 542150 (+) True CI01000206_00537962_00541275
CI01000206_00571550_00572992.mRNA mRNA downstream 65736 571550 ~ 573289 (+) True CI01000206_00571550_00572992
CI01000206_00666815_00743152.mRNA mRNA downstream 161001 666815 ~ 743152 (+) True CI01000206_00666815_00743152
CI01000206_00748542_00751311.mRNA mRNA downstream 242728 748542 ~ 751571 (+) True CI01000206_00748542_00751311
TU446214 other downstream 55331 561145 ~ 565669 (+) True G389767
TU446171 other downstream 74017 579831 ~ 583898 (+) True G389725
TU446222 other downstream 100521 606335 ~ 608065 (+) True G389774

Expression Profile