RNA id: TU446214


Basic Information

Item Value
RNA id TU446214
length 470
RNA type TUCP
GC content 0.43
exon number 4
gene id G389767
representative True

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 561145 ~ 565669 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACATTTCTGAATGGAAGTTGATGGAAACACGTGTGAAGTTTCTGCAGAACATCCAAGACAGAGAGAAGGATTTTAAAGAGCTAACACAGACTGAGGAGTCGATCCGTCGTTCAGCACAGACAGCAGTCACAGAAAGTGAACGAATCTTCAGCGAGGTGCTGCGCTCTGTTCAGAAAACAAGCTGCCGCGTGAAAGAACTGATTGCAGATCAACAGAGAGCTGAACTCAATCATACTGAAGGACTTCAGGAGAAAGTCCAGCAGAAGATCGCTGACATGAAGATGAAGGTGTCTGAGCTTGATCAGTTTATGACCACTGAAGATCACATTCATTTCCTGCAGAATTACCCGTCTGACTGTGAAGAATCCATGTCTGAAGAATTTGANNNNNNNNNNNNNNNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446210 lncRNA upstream 5869 555061 ~ 555276 (+) True G389764
TU446205 lncRNA upstream 33390 527097 ~ 527755 (+) True G389759
TU446199 lncRNA upstream 49988 510929 ~ 511157 (+) True G389753
TU446174 lncRNA upstream 55331 505517 ~ 505814 (+) True G389728
TU446123 lncRNA upstream 216941 343788 ~ 344204 (+) True G389684
TU446175 lncRNA downstream 26636 592305 ~ 592887 (+) True G389729
TU446217 lncRNA downstream 31246 596915 ~ 597114 (+) True G389769
TU446176 lncRNA downstream 38304 603973 ~ 606233 (+) True G389730
TU446198 lncRNA downstream 80782 646451 ~ 689149 (+) True G389752
CI01000206_00537962_00541275.mRNA mRNA upstream 18995 537889 ~ 542150 (+) True CI01000206_00537962_00541275
CI01000206_00475810_00481198.mRNA mRNA upstream 79923 475810 ~ 481222 (+) True CI01000206_00475810_00481198
CI01000206_00426915_00452327.mRNA mRNA upstream 108039 426794 ~ 453106 (+) True CI01000206_00426915_00452327
CI01000206_00385497_00393583.mRNA mRNA upstream 167562 385497 ~ 393583 (+) True CI01000206_00385497_00393583
CI01000206_00220974_00253610.mRNA mRNA upstream 307535 220974 ~ 253610 (+) True CI01000206_00220974_00253610
CI01000206_00571550_00572992.mRNA mRNA downstream 5881 571550 ~ 573289 (+) True CI01000206_00571550_00572992
CI01000206_00666815_00743152.mRNA mRNA downstream 101146 666815 ~ 743152 (+) True CI01000206_00666815_00743152
CI01000206_00748542_00751311.mRNA mRNA downstream 182873 748542 ~ 751571 (+) True CI01000206_00748542_00751311
TU446171 other downstream 14162 579831 ~ 583898 (+) True G389725
TU446222 other downstream 40666 606335 ~ 608065 (+) True G389774

Expression Profile