RNA id: TCONS_00001516


Basic Information

Item Value
RNA id TCONS_00001516
length 89
RNA type miRNA
GC content 0.46
exon number 1
gene id XLOC_000952
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 3296607 ~ 3299853 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTGCAGTTCTCTGCTAGTTTTGCATAGTTGCACTACAAGAAAACGGGAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000164057

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001511 lncRNA downstream 583573 2704604 ~ 2714275 (-) True XLOC_000950
TCONS_00002901 lncRNA downstream 795104 2495021 ~ 2502744 (-) False XLOC_000949
TCONS_00003305 lncRNA downstream 795105 2497873 ~ 2502743 (-) True XLOC_000949
TCONS_00003304 lncRNA downstream 1046812 2239211 ~ 2251036 (-) True XLOC_000945
TCONS_00003303 lncRNA downstream 1196587 2093996 ~ 2101261 (-) True XLOC_000944
TCONS_00001519 lncRNA upstream 7613 3305549 ~ 3309194 (-) False XLOC_000953
TCONS_00001520 lncRNA upstream 7613 3305549 ~ 3330435 (-) True XLOC_000953
TCONS_00003307 lncRNA upstream 546900 3844836 ~ 3846716 (-) False XLOC_000954
TCONS_00003308 lncRNA upstream 546900 3844836 ~ 3846864 (-) True XLOC_000954
TCONS_00002902 lncRNA upstream 731833 4029769 ~ 4074148 (-) True XLOC_000955
TCONS_00001512 mRNA downstream 2803 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 840302 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 844663 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 844674 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001507 mRNA downstream 849256 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001524 mRNA upstream 2056553 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 2065633 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 2151841 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 2151934 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 2206192 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001515 other downstream 93 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001514 other downstream 278 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001513 other downstream 397 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001497 other downstream 1369737 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other downstream 1403843 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001517 other upstream 70 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001518 other upstream 176 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001521 other upstream 912562 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001523 other upstream 1780435 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001538 other upstream 2922945 6220881 ~ 6222249 (-) False XLOC_000970