RNA id: TCONS_00003309


Basic Information

Item Value
RNA id TCONS_00003309
length 701
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id XLOC_000956
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 4084178 ~ 4250442 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAATCGCCTGTTTTCTGTAGTCGTGAACGATGATTTACACCGTGATACACTGTTACCTCTATGAATTGTTACACCTTTAGATGGCACCACGGGACTACCTTTATAACCGATAGCAAGACTTTTATATTGAAAAGAGACGAAACACGGACTTAAGTTTTACTTCCAGCTACCAAGTGTCATTGAAACATCATGGGATACATTATAGAAAGATGATAACCGACAAATcgcaataaagaaaacaaaatgagGGGTTAAGGAGCTATCTGAGAAGATTAGTTTCTGGTTGTCATTTGAAGGATACCAGTGAATCTGCAGTCCGTGTTGGAATGGGAAGATCATACCACCAGCTTGGAACATTGAATGTAAAGGTTTTGGAAAGAGACCTATGGCCTCTCTGCGATGGTACCACAAGGCGATGCTCACTCACTGACCCGAGGCTCCTGGAGGGGGTGTAGACCTTCAGCAGCAGGTGGAGCGCGTACGTGACGACGGAAGGAACCAAAGCTGAGAAGATCTCCGAAGGCTGTTTATCAAACCCCAAAAAAGTTCAAGTCCACCCCGCAGTCAAAGCTTTCTATTCCGAGCCCGTCCTCAATCACAGCAAACAGCGCTTTACCGAAACAGCACTTAAACAAAGCCTCGTTTCTGAGCCCTCTGATGGGGTGTTGATAACCAGGCCAGTGCCACCACATGACGCGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002902 lncRNA downstream 10030 4029769 ~ 4074148 (-) True XLOC_000955
TCONS_00003308 lncRNA downstream 237314 3844836 ~ 3846864 (-) True XLOC_000954
TCONS_00003307 lncRNA downstream 237462 3844836 ~ 3846716 (-) False XLOC_000954
TCONS_00001520 lncRNA downstream 753743 3305549 ~ 3330435 (-) True XLOC_000953
TCONS_00001519 lncRNA downstream 774984 3305549 ~ 3309194 (-) False XLOC_000953
TCONS_00002903 lncRNA upstream 533343 4783785 ~ 4785460 (-) False XLOC_000958
TCONS_00002904 lncRNA upstream 533422 4783864 ~ 4785460 (-) False XLOC_000958
TCONS_00002905 lncRNA upstream 534293 4784735 ~ 4785460 (-) True XLOC_000958
TCONS_00003312 lncRNA upstream 898151 5148593 ~ 5153828 (-) True XLOC_000960
TCONS_00003313 lncRNA upstream 944636 5195078 ~ 5196609 (-) False XLOC_000961
TCONS_00001512 mRNA downstream 789133 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 1626632 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 1630993 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 1631004 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001507 mRNA downstream 1635586 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001524 mRNA upstream 1104047 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 1113127 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 1199335 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 1199428 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 1253686 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001518 other downstream 785929 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 786090 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 786242 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001515 other downstream 786423 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001514 other downstream 786608 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001523 other upstream 827929 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001538 other upstream 1970439 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 2202962 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 2891597 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 3323909 7574351 ~ 7603573 (-) False XLOC_000977