RNA id: TU453702


Basic Information

Item Value
RNA id TU453702
length 493
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G395884
representative True

Chromosome Information

Item Value
chromosome id CI01000229
NCBI id null
chromosome length 388777
location 226867 ~ 227359 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAATTCTGACTTTATAACTCACAATTCTGACTTTATATCTCGCAATTCTGACTTTATAACTCACAATTCTGACTTTATATCGCAATTCTGACTTTATAACTCATATTTCTGACTTTATAACTCACAATTCTGGCTTTATTCATTCAATTCTGAGAAAAAAAAAAGTCAGAATTGTGAAATGAATTGTTTATTTTATGGCGGAAACAAGCTTCCATAAATTTCAGTCACCAAAAAACACAATTTTCTGGCTTATACAGAAGTTTGAAGATAGACACATTTTAACAAAGTTTGATGAATCACACACAGTCCCAAAACAAATGATTCATTGTCTCTTCAAACTTATTACAAAAGGAGCACATGGGGGAAATACTATTATTAAATTCATCTAGTTTTTAATTAACTGGGTAGCAATTGTGAATAATTTTAATAGAGACTTCAACAACTTTATTAAATTAAAAAAAAAAAAAAAAAAAAAAAAATCACCAAAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453701 lncRNA upstream 2912 223216 ~ 223955 (+) True G395883
TU453630 lncRNA upstream 6839 218834 ~ 220028 (+) True G395824
TU453698 lncRNA upstream 10172 214918 ~ 216695 (+) True G395880
TU453641 lncRNA upstream 15487 209767 ~ 211380 (+) True G395830
TU453696 lncRNA upstream 19076 207591 ~ 207791 (+) True G395878
TU453703 lncRNA downstream 152 227511 ~ 227733 (+) True G395885
TU453726 lncRNA downstream 826 228185 ~ 294002 (+) True G395899
TU453725 lncRNA downstream 22506 249865 ~ 256890 (+) True G395898
TU453713 lncRNA downstream 76876 304235 ~ 307005 (+) False G395889
TU453712 lncRNA downstream 76916 304275 ~ 307005 (+) True G395889
CI01000229_00161103_00173718.mRNA mRNA upstream 53149 161103 ~ 173718 (+) True CI01000229_00161103_00173718
CI01000229_00122889_00158667.mRNA mRNA upstream 68162 122847 ~ 158705 (+) True CI01000229_00122889_00158667
CI01000229_00052137_00112907.mRNA mRNA upstream 113928 50886 ~ 112939 (+) False CI01000229_00052137_00112907
CI01000229_00276495_00285291.mRNA mRNA downstream 49136 276495 ~ 285291 (+) True CI01000229_00276495_00285291
CI01000229_00285850_00289175.mRNA mRNA downstream 58491 285850 ~ 289772 (+) True CI01000229_00285850_00289175
CI01000229_00297413_00299522.mRNA mRNA downstream 69626 296985 ~ 299537 (+) False CI01000229_00297413_00299522
CI01000229_00310413_00314707.mRNA mRNA downstream 83054 310413 ~ 314934 (+) True CI01000229_00310413_00314707
CI01000229_00348539_00352001.mRNA mRNA downstream 121180 348539 ~ 352891 (+) True CI01000229_00348539_00352001
TU453706 other downstream 69904 297263 ~ 299472 (+) True CI01000229_00297413_00299522

Expression Profile