RNA id: TCONS_00002905


Basic Information

Item Value
RNA id TCONS_00002905
length 309
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_000958
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 4783785 ~ 4785460 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGctcataggaactccaatcttcccaactgtgagagggccttgctccagtga

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003309 lncRNA downstream 534293 4084178 ~ 4250442 (-) False XLOC_000956
TCONS_00003310 lncRNA downstream 534293 4182970 ~ 4250442 (-) False XLOC_000956
TCONS_00003311 lncRNA downstream 534293 4208516 ~ 4250442 (-) False XLOC_000956
TCONS_00001522 lncRNA downstream 534293 4235403 ~ 4250442 (-) True XLOC_000956
TCONS_00002902 lncRNA downstream 710587 4029769 ~ 4074148 (-) True XLOC_000955
TCONS_00003312 lncRNA upstream 363133 5148593 ~ 5153828 (-) True XLOC_000960
TCONS_00003313 lncRNA upstream 409618 5195078 ~ 5196609 (-) False XLOC_000961
TCONS_00003314 lncRNA upstream 410238 5195698 ~ 5196721 (-) True XLOC_000961
TCONS_00003315 lncRNA upstream 565412 5350872 ~ 5352442 (-) True XLOC_000962
TCONS_00001530 lncRNA upstream 721064 5506524 ~ 5509585 (-) False XLOC_000965
TCONS_00001512 mRNA downstream 1489690 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 2327189 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 2331550 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 2331561 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001507 mRNA downstream 2336143 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001524 mRNA upstream 569029 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 578109 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 664317 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 664410 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 718668 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001521 other downstream 574083 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 1486486 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 1486647 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 1486799 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001515 other downstream 1486980 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001523 other upstream 292911 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001538 other upstream 1435421 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 1667944 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 2356579 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 2788891 7574351 ~ 7603573 (-) False XLOC_000977

Expression Profile

//