RNA id: TCONS_00003312


Basic Information

Item Value
RNA id TCONS_00003312
length 5236
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id XLOC_000960
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5148593 ~ 5153828 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGATGGCCAATTTAAAACATCAGATGAAACAGAAATAAGATTGATGCCTTTAATAAAGAACATccctttttaaaatacatttccatATAACACGGCTCATATATCTTCAAGTGCAGCTTTTTACTTTTCTTGCGTGCCGTAGTTCCAGGCGCCGTTTCGGATCCGGCCTGAGTGGATAATTCAAAATATTTTGGaggctattattttctatttgtcatttttacctAGGTTTGAAGTACCGGCGAAGCTTATTCGCTTTCCAGCTGTCAGCTGCATTGAGACCGCTTTTAGCGAGCTTAAGAGAATGTTCTCTGTCAGCCATTGAATACTGCAACCCTCCATATTTAGATTTGCCATTCAAAATGATAGAGGTGTCACATAAAGAGAGGTCTGACTGTGTCAGTGCATCTATAAAAGGTGTCAAACATGCTGGTTTGAATCCAGCGTTTAAGTGCTTTTCCTTTCTCTGCCTTCAATGCCCGCCAGCTGGAGAAGGAGAATAAAAAGAGCGAGAAAACATTAAATGCCACCGCAGCATCTGTCAAGCACATCATAGACAACATCAAGATCCTCCTCGCTGCAGTTTGACCCGCTGAACGGTCATctgaagctgatagaaatgcgATTCTCTCTCTGCTTATCCTTTGTGTTTTGGTTGGATTGTTTGTTTCTCTCTTCCTGTGTTTTCAGGGCCACTTCTGAGACTCAGAGACGGAAAGCAGAGACGTTTAGAGAGTGATGCTGCCAACCTCTCAACAGGGGGCAATCGCTTTACCTGTCAACCCCTCTGCATGTCGCCTTTCATTTTCCGGCTCGAGGGACAAGAGAAAGCGAATAACCGCATTCACAGACACCCAGATGTTCCATTGGTGAGTCTCCAGCACGTCGCTGAACTGCCTTTTTATTTCCTGCTTCTGAATGATGGCTGACTTGTGTAGGAGTTGACAAAAaagaaacaggaaaaaaaaaagattatgaaAAAAACGGCAAGCATTTAGCATTTTGCTGCGGCGGCAAATAAAGGATGAATTATTCATCTGAGCTGTCAATGATACTCTTATTCTGCATGCAAAGTGGAAACTACTGTGCTTAAAGGAATCGACTTGAACTCTGTGGATTGCTTTGCTAACGGAATATAGCTCATCCTAATGGCAACCGGCCAACTGAGTAGCGTTATATGAGATATGagccttaataaaataaaatattagcttaaaaataataaaataaaataaaataaaattaataaaagattattttttttattttctgctaagtctctttattaatctggggtcgccacagtggaatgaaccaccaacttattcagcacatgttttatgcagcggatgcctgtccagctgcaaaccatcactgggaaacacccatacactttcattcacacacatatggacAATTTCAGCCtaaccaatttacctatagcacatttctttggactgtgggggaaaccagagcacccacaggaaacccacgcgaacacggggagaacatgcagactccacacagaaatgtcaacagacccagccgaggcttgaatcagcgcccttcttgctgtgaggcaacagcactacctactgcaccacagcGTCGcccaataaaatattacatttagataaaataaaacaaatgaaacaaaataaaaatattcagatataaaataaatatgtttagatatgttcaattttcattttattttaagttttagtaGTTTTATGTCCTTTCGTCaatttaatttcttaaacatatttatattagtctttATTCCTCTCtaatctttttttcttatttagtaATTTTGGCATTTGAAGGAacattagaaataataaaaaaacattttttttaaccttatagttaaaattatatttattaaggtTATACcagtagtatttttatttactaacaacaacaacaacaactctatGATGTGGAAAACAATCAAAAAGAAAGattggaaaaaatatttaaactttctttctttctttctttcttcatttatttatttatttatgtattttcaaaTTGAGTAGAGTTATATAACTTTTACAAGATATAATAATTTTgcccattttatttttaaaaaacatttctgttagCCTTTATacctctcaatttttttttttcatgtttgatAATTTTGGTATTTTTAAGAACATTAGAAAGATTTGAAAGAAACCTTTTGAGTTTTTttcacataatatttatatttattttaattatacaaaaCTTTATAATTGAGTTTAGTTAATAACAACAACTCTGTTCTATGATGTGTAAAACAATCAAGATTATAAAGAGTGGAAAAATATCACAGGAAAagtcatattatttatttgtttatttttttacaattgagTTATATGAAATATGaaccttaataaaaataaataaacaaataaaataaatattcaaatatattttgatatgctaaattttcattttaacaaaacatgaaAGGAGATATGAaccttattaaataaaaaaatgaaacaaaacaaaacaagtaattttatttttttattttttatttaaattatttatttaattgtttacatatatatatatatatatatatatatatatatatatatgtttatctatttatttatttacttactggcttttttatttatatacttatttatttatttactgactcgtttattttttacttactcatttttcaatttatttgtttacttactgactcatttatttatttatttatttactgacttatttacttatttatatttatttacttactggtttatttatttacttacagacacatttatttatttatttacttactggtttatttatttactcaccgactcatttatttatttatttacttactgacttatttatatatttacttacttactgacttatttaaaatttattcaaatattattcaAACCAAAAGGGTGGTTCTTTAAACTATACATTGAAAAGTTAATTGTAGAACCAGAAATAGTTCTTCTATGTACTCACTACaaactacaaacaaacaaacaaaactcttTTAGAATCTTCATTTTAAAGAGAGTATTTCTACATTCTTGTCCCCAAAACATGTGTGTTGCTGAACCCTTGCTTCATGTCCTTGCTCTGACCCGACAAAATGGCATGGAATGACAAAAAGGAGTCTGGTCACAGGCCAGAAAGATAAATCTACCGCTGAAACATCTGAATCTTCACGGCAGGAATCAGTGAAGGCCTGTGTCTGAAATAGGAGCACGGGCTCAGATGAGGCTTATGtcacacaacacaacactttCTTCCATTGATTCTGAAATACCCAGCACTCATACGTTGTTTTGCTGAAGCGCAGAGTTCCACTTGATCTAGCAACACCACAATACTGTTGATTGTGTCACAGTGATGAAACCGCTCTCCACGGAGCATCATTCTTCCTCTCAGGGAAGATGGAGAGATGGATCAGGTTTGGCCTGAGGGCAAAAGTCGAATGACAACACCATTACACTTCCAATCTCCATTCTAGAATTAGTCCGCCTGTGTTTCTCTTTCTGAAAGCACACTGGAAGACTTCCTTTGAGCTCTTCTCAATCTCCTCCTCCACTCAggctacataaacacacatgcggAGGTAAGATTTATGTGGCTGGTAGATATTTAATGGCTGTGTGGGTAAAAGCTCTCGGTCTGTTAATTTAGTTCAGTGATAAAAGCGCTTCTTGATGCAGTGCAGCAGTGCATCCATTGCAATCCATTTGATGCTCATTTCATTGATGCTCCATTGGTTCTCTGTTAGTGACAAGAGGTGCTTAATATGTTCAGAAAATACTGATGGCCAAGCTTAAGAGGCCAAGCTAAATTTTTGAAATACAATTTTTGAAGGAAATATCTATGAATTGAGAGGGACAAAGATACAGGTACTAGTTACAGATAAAGttatattttctttaatttaaagTTGCTATTGTGGTTAATGCTAAAATAAATCTAACGATACAGAAAGAATAGCAAACGAAGAGCAAagaacagcaaaaaataaaataaaaactgaaaataaaaataaaataaatttttaaacaaatgaagtgaatgcatgataataatattactatatataaattattatgtaATAGTATCTTAttatgtaataattaataattaatgaattagttGGTTGATTATTTAGATTACTGttattatggatttatttacttactATATATATTTGGTTAAAGTGAATTCTAAAATGAATTCTTAATgacattaagtaaataaaataaataaaaataaataaataaataaataaataaatatctagataaatgaaacaataaataaataaacaaatatacatatatatgtaaagataaagataaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatacacacacacacacacacacatacatatacacacacacacacacacacacacacaaatatatatatatatatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatgaataaataaataaacagataaatgaatagtaaataaaataaatatatacatatctagataaatgaaaaaaataaataaactgataaacataaaaataaagacaaatgaataatatattagaatataaataaataaataaataaaacaaacattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaattaagtgGATtgcacataaaacatttaagttgtttaaaaaaaacctcgagaattgtgttgattcagttcatgttaaataaataaattaaacaagcagcaaaagtgttTTTTGAGTGCAAGAATTGTGCTTGTTTtacctaattttaaataaaaacagcagagTATTTTTGGAGggtatattttattatgtaaaagaaagtaaataacttttttaattcaTTAGGTTATTCTAATTTGCAGGTAATTTACAGGTAATTTGAAGGTAATTTGCAGGTTGGAAGCAAAATGtgtgacactgttaaacattaatTTCTCCCCACGGTCTACAACAACgacaactattttttttacagGTTTCCAGAGACTGAACTGTGACAGTGAATAAACCGAATGATGAAATGCAGCTTTCTCTTGACAACACAAAATCCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002903 lncRNA downstream 363133 4783785 ~ 4785460 (-) False XLOC_000958
TCONS_00002904 lncRNA downstream 363133 4783864 ~ 4785460 (-) False XLOC_000958
TCONS_00002905 lncRNA downstream 363133 4784735 ~ 4785460 (-) True XLOC_000958
TCONS_00003309 lncRNA downstream 898151 4084178 ~ 4250442 (-) False XLOC_000956
TCONS_00003310 lncRNA downstream 898151 4182970 ~ 4250442 (-) False XLOC_000956
TCONS_00003313 lncRNA upstream 41250 5195078 ~ 5196609 (-) False XLOC_000961
TCONS_00003314 lncRNA upstream 41870 5195698 ~ 5196721 (-) True XLOC_000961
TCONS_00003315 lncRNA upstream 197044 5350872 ~ 5352442 (-) True XLOC_000962
TCONS_00001530 lncRNA upstream 352696 5506524 ~ 5509585 (-) False XLOC_000965
TCONS_00001531 lncRNA upstream 355976 5509804 ~ 5511662 (-) False XLOC_000965
TCONS_00001512 mRNA downstream 1853548 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 2691047 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 2695408 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 2695419 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001507 mRNA downstream 2700001 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001524 mRNA upstream 200661 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 209741 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 295949 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 296042 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 350300 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001523 other downstream 70105 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 937941 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 1850344 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 1850505 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 1850657 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001538 other upstream 1067053 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 1299576 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 1988211 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 2420523 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 2478291 7632119 ~ 7650072 (-) False XLOC_000978

Expression Profile

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