RNA id: TCONS_00003313


Basic Information

Item Value
RNA id TCONS_00003313
length 255
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_000961
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5195078 ~ 5196721 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTATTTGCCGAGGAAAGGATTCTTACAGTGCCTGGAAAAGACTGAATGGTCTGAGACAAGAGGGGAAAGACTGATCAATATCTAATCAGAGGGCGGAGGAGAGGAGGTGTTTGTGCACAGCAGACAAACACATAAAACTCTGCTAGCCCATCTACAGATTACAAAgcttgtggggaaaccggagcaccgggaggaatcccatgccaacatgggaggaacatgcaaactctacacagaaatgccaactgaccca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003312 lncRNA downstream 41250 5148593 ~ 5153828 (-) True XLOC_000960
TCONS_00002903 lncRNA downstream 409618 4783785 ~ 4785460 (-) False XLOC_000958
TCONS_00002904 lncRNA downstream 409618 4783864 ~ 4785460 (-) False XLOC_000958
TCONS_00002905 lncRNA downstream 409618 4784735 ~ 4785460 (-) True XLOC_000958
TCONS_00003311 lncRNA downstream 944636 4208516 ~ 4250442 (-) False XLOC_000956
TCONS_00003315 lncRNA upstream 154263 5350872 ~ 5352442 (-) True XLOC_000962
TCONS_00001530 lncRNA upstream 309915 5506524 ~ 5509585 (-) False XLOC_000965
TCONS_00001531 lncRNA upstream 313195 5509804 ~ 5511662 (-) False XLOC_000965
TCONS_00003316 lncRNA upstream 339729 5536338 ~ 5543063 (-) True XLOC_000965
TCONS_00003317 lncRNA upstream 818121 6014730 ~ 6024808 (-) False XLOC_000967
TCONS_00001512 mRNA downstream 1900033 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 2737532 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 2741893 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 2741904 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001507 mRNA downstream 2746486 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001524 mRNA upstream 157880 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 166960 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 253168 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 253261 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 307519 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001523 other downstream 116590 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 984426 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 1896829 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 1896990 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 1897142 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001538 other upstream 1024272 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 1256795 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 1945430 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 2377742 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 2435510 7632119 ~ 7650072 (-) False XLOC_000978

Expression Profile

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