RNA id: TCONS_00001525


Basic Information

Item Value
RNA id TCONS_00001525
length 960
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_000963
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5354489 ~ 5394791 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAACGTCATGCTTGCGTCACGGACTACTCCTCCCACTCGCTTTGTTTCTTGGGGCAGGACGCGACAGCATCTGCATGAGCGTTTGCGGTAAATCATGGCTGTACTGTGAATGGAAAGAGCTGCCTTTTTTTGTATATAAAGAATCCGAGCCGTATGATCTCAAGTAAGATCGAGACCCGactttaatttgattaaatcaaGGATTTTCTGGTTTTGTTCACCGCTTGCTGGGCTGGCCGTGTATGAAAATGGACCAGGCGGCGAGCCGCTACCAAGTGTTGCACAATGAGGATGACTCCTCTGAAGGGGCCGCCAGTGCTGAACCGTCCACATCCACCCAGGCCGTTGGCGCTTTGGAGGGAATCAGCAACCTAGCAGTGGATACAGAAGCTCCACCTCCTCCATATGCAAGCGTGGCACTTGGAGCAACAGCTGCACCAGAAAGCACATTTGCAGGGGACTTTCCCGTTCCTCCACCATACAGCATTGCCACGTCTCTGCCCACTTACGATGAGGCAGAGAAGGCCAAAGCAGCAGCCATGGCTGCATCCGCGGTGGAGGTCATTCCACGAGATGAAGATTTTCCGGTTCGGGATGACTTCAGTGATGCAGATCAGCTGAGAGTGGGAAATGATGGGATCTTTATGCTGGCCTTTTTCATGGCCTTTCTTTTCAACTGGATCGGGTTTTGCTTGTCCTTCTGTTTGACCAATACCATTGCTGGTCGATATGGTGCTATCTGCGGCTTTGGCCTTTCTCTTATCAAGTGGATCCTCATTGTCAGGTTTTCAGATTACTTTACCGGGTACTTCAATGGACAGTACTGGCTCTGGTGGATTTTTCTGGTTCTTGGGCTCCTGCTGTTCTTCAGAGGGTTTGTGAACTACCTGAAAGTGCGTAACATGTCAGAAAGCATGGTTTCCTCACTCAGAACCCGCTTCTTCCTCCTGTACTAGAG

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0030001 metal ion transport biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050699 WW domain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2662 Predicted to enable WW domain binding activity. Predicted to be involved in metal ion transport; positive regulation of protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within vacuolar transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human NDFIP2 (Nedd4 family interacting protein 2).

Ensembl:

ensembl_id ENSDART00000188453

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003315 lncRNA downstream 11127 5350872 ~ 5352442 (-) True XLOC_000962
TCONS_00003314 lncRNA downstream 166848 5195698 ~ 5196721 (-) True XLOC_000961
TCONS_00003313 lncRNA downstream 166960 5195078 ~ 5196609 (-) False XLOC_000961
TCONS_00003312 lncRNA downstream 209741 5148593 ~ 5153828 (-) True XLOC_000960
TCONS_00002905 lncRNA downstream 578109 4784735 ~ 4785460 (-) True XLOC_000958
TCONS_00001530 lncRNA upstream 111733 5506524 ~ 5509585 (-) False XLOC_000965
TCONS_00001531 lncRNA upstream 115013 5509804 ~ 5511662 (-) False XLOC_000965
TCONS_00003316 lncRNA upstream 141547 5536338 ~ 5543063 (-) True XLOC_000965
TCONS_00003317 lncRNA upstream 619939 6014730 ~ 6024808 (-) False XLOC_000967
TCONS_00003318 lncRNA upstream 626725 6021516 ~ 6024808 (-) True XLOC_000967
TCONS_00001512 mRNA downstream 2068524 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 2906023 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 2910384 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 2910395 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001507 mRNA downstream 2914977 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001526 mRNA upstream 54986 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 55079 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 109337 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001529 mRNA upstream 109337 5504128 ~ 5543065 (-) False XLOC_000965
TCONS_00001532 mRNA upstream 141547 5536338 ~ 5542565 (-) False XLOC_000965
TCONS_00001523 other downstream 285081 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 1152917 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 2065320 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 2065481 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 2065633 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001538 other upstream 826090 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 1058613 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 1747248 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 2179560 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 2237328 7632119 ~ 7650072 (-) False XLOC_000978

Expression Profile

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