RNA id: TCONS_00001526


Basic Information

Item Value
RNA id TCONS_00001526
length 1152
RNA type mRNA
GC content 0.54
exon number 3
gene id XLOC_000964
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5449777 ~ 5455502 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGCGTAAAACGCAGCTATCAGCGCAATTACCTGCAACTCTAAACACAACAAAAGTGTTGCAATGGAAAAGTCAAAGAACTTCAGGATCGACGCCCTTTTAGCTGAAGAACCACATCGAGGGAGCCGAGAAGTTTCCCCTGGACTGAGCAGCGACAGCCCGACTGGgagtccggtgtcctgcaggcgCGGTGACACCCCGTCCCCCCGCGGGACCCCAGGTGCCATACACCTCCAACCCGGAATCATACCGAAACCAGGGCTGCTCAATCTCCCTCACCCGGGACTCACTTCTATCCCAGGCATGTACACGACGCCCATGTACCCCATTTCAGCATTGGGAGGTCAGCACCCTGCACTAGCGTACACTGGGTTCACCCAGCTGACGCAGCCGTACCCGGAGCAGCTGAAGGCGGCGGCGATGGCCGGATCATTACCGCTGGAGCATTGGATACGAGCTGGCATCATGGTACCACGACTGCCCGATTACACCTGTGAGTGGGGTAGCATTCAGATGACTGCCCCTCAGTCTGGTTTGATGGGTAAATGTCGAAGGCCTCGGACAGCATTTACTAGTCAACAACTACTGGAGCTGGAAAACCAGTTTAAACTTAATAAATACCTTTCCAGACCCAAACGCTTCGAAGTGGCCACATCTCTAATGCTGACTGAGACACAGGTGAAGATCTGGTTCCAGAACCGGCGGATGAAGTGGAAGCGCAGTCGTAAAGCTAAAGAGCAGGCGGCGCAGGTGGAGGTGGAGCGGCAGCGTGGAGGAACCAAACCCAGCGGACGGGACAGCAGACGCGCTCCAGCAGCTCCCAGTGTGGAGGaacaggaggaagaggaggaggaggaagaggagataGATGAAGACGAAGAGGACGAAGAGGACGGACAACACAAGTTCATCAACAACAGCCTCAGCGTGTCCCGATCCACAGACTTTCTGCACCACACCGCTGCGTTATATCATCCCGACAGCCCCTTCTCGGAGGACGACATAGAGGAGCTGCATGGAGGAGAGAGGAAGATCCGGGCAGGGttatgaagacttgtttaaattACTATGGAACTTTGACTCTATGGTAGCATTAGGGGTAAATATCAGCCAGCCTTTTAGACACTTATCAGTGATGGCACTGGACATTGG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040415-2 Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within spinal cord motor neuron cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including endodermal cell; lateral mesoderm; motor neurons; spinal cord; and spinal cord neural tube.

Ensembl:

ensembl_id ENSDART00000114035

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003315 lncRNA downstream 97335 5350872 ~ 5352442 (-) True XLOC_000962
TCONS_00003314 lncRNA downstream 253056 5195698 ~ 5196721 (-) True XLOC_000961
TCONS_00003313 lncRNA downstream 253168 5195078 ~ 5196609 (-) False XLOC_000961
TCONS_00003312 lncRNA downstream 295949 5148593 ~ 5153828 (-) True XLOC_000960
TCONS_00002905 lncRNA downstream 664317 4784735 ~ 4785460 (-) True XLOC_000958
TCONS_00001530 lncRNA upstream 51022 5506524 ~ 5509585 (-) False XLOC_000965
TCONS_00001531 lncRNA upstream 54302 5509804 ~ 5511662 (-) False XLOC_000965
TCONS_00003316 lncRNA upstream 80836 5536338 ~ 5543063 (-) True XLOC_000965
TCONS_00003317 lncRNA upstream 559228 6014730 ~ 6024808 (-) False XLOC_000967
TCONS_00003318 lncRNA upstream 566014 6021516 ~ 6024808 (-) True XLOC_000967
TCONS_00001525 mRNA downstream 54986 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001524 mRNA downstream 55025 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001512 mRNA downstream 2154732 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 2992231 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 2996592 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001528 mRNA upstream 48626 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001529 mRNA upstream 48626 5504128 ~ 5543065 (-) False XLOC_000965
TCONS_00001532 mRNA upstream 80836 5536338 ~ 5542565 (-) False XLOC_000965
TCONS_00001533 mRNA upstream 150958 5606460 ~ 5746030 (-) False XLOC_000966
TCONS_00001534 mRNA upstream 272848 5728350 ~ 5745420 (-) True XLOC_000966
TCONS_00001523 other downstream 371289 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 1239125 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 2151528 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 2151689 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 2151841 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001538 other upstream 765379 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 997902 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 1686537 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 2118849 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 2176617 7632119 ~ 7650072 (-) False XLOC_000978

Expression Profile

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