RNA id: CI01000299_00013442_00032151.mRNA


Basic Information

Item Value
RNA id CI01000299_00013442_00032151.mRNA
length 5023
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000299_00013442_00032151
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 12783 ~ 33074 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAATGTAAAGGGAGACAGAATTGTCACACTTTTTATTCCAATGAATATTTGTGAATGTAGATGGTTTGTAACAGATAGATTTGTATTTATAAATTAAATACTCCATAGGAAAAAATATTGTTAGACAATTCTTTTTGCTAATTTTGCTAAGGTATTTCATTGGCTTGCATTTTGCAATCCCATTGACTGTGTGTTTCTATTAACATTAAAGGGGTAGTTCACCCAAAAATTACATTTCAGAAATAGTTTTACATTTACTTAACCTCATTTCATCTATGAAATAGGAAAGCAGACATCGTACATAAATCAAATACTCATGCTACTATTGTATTATAACTCAAATGTTATTTTGTGAGTCCTGCAGACAGCAGGTGCAAAGTCAAGTTAAATTTATCCTTTACTTACAAATGACTTTCAGTTTCTATTTCCAGGAAATGCAGCTGGTTCTTGAACTTGTCATGAACAGTTTCTGTTTCTATTTCCAATGTATCTAATGTTTGAAAAATATGCATGTCAATAAATGACAGATAGCTTGGATTTAAAGAGTGTGTATGGTTCACATGAAAAAACTTTAACAGATGGAACCATTCCATTGCACAAAAGGTTCTGGGATATTCCAGAAGAGGAGCATTGCTGTGTCAAATCTTCAGGTGTGATGGCACCAAAATGGGCACGTACTGAGAAACCAGTGCAGATGGATCCTGGAGAAGATGGGGAAGAACTACAAGGGGCTAGTGGAGGTGTTGTTGAACCAGATCCCTCTGGGAGTTCTTCTAGGGATATTGCTGAGCTCAAGCATATGTTCCAGAAATTCCTGGTTGATCAAAGAGAAAGACAAGTCCATCAAGAACAAGAAAATGCACGGCAAGAAACAAGATTGAAGTCCTTGCAACATCAGTTTCGCTTACTGCAGGGAGAAGTAAGTCAACATACCTCACTGGGAAGTCTGCCACTAGGGGAGAGTGAGGGCCCAGTGTGCAAATGGCCTCCAGAAGACTGGGCCATTCGACTAGTTCCTCTACTCACTGGTAAGGCCCGGGCTGCCTATGTGGCTATGGATGTGGAAGAAGCGACCGACTATGGGCAGGTGAGAGAGGCAATATTGAAGAAATACTCTATCAATGCTGAGACCTATCGTCAGCGGTTTCATTCTATGGAGGTGCTGATGGAAGAAACTCCTAAGGAATTGTACGTTCGGTTGAAGGATCTGTTCTATAAATGGGTGAAACCTGCAGAAAAGACTGTATATGAGGTTGCAGAGAGTATCATTTTGGAACAGTTTTTAAGAATGTTATGTCCTGAACTGCAAACCTGGATTAAAGAGCATGATCCAACCTCTGCTGAGGAGGCTGCCAGGTTGGCGGATGTATTTGTGGCAGCTAGGCGAAGGACTGAGCCTTGGAGTTTTGCTCAGTGGAAGATCGTAAGGGACAAGCCGTCCTCCCGCAAGACAACCTTACTGCAAGAAGGGGGTAAGAGTATGGGTGAGAGACTGGTGAAACAAACAGAAATGTCTAGCTTACCTACAGTTGGGACTATTAAGTGTTTTAGTTGTGGCCAGATAGGCCATAAGAAACCAATGTGTCCAAACTTGAATAAAAAGCTTACCAATGTCTGTTATGTTCCACGGCTGATGAAACCTGAACCTAGCATTACTCGAATGCCCAGTGATGTCACAATTCCTGTAGAATTGAATGTTAAAAAGGTTATAGCTTTGGTAGACACAGGATGCACTCAAACTTTGGTAGAGACTGATCTTGTATCTGAATGTTCTGGGGAAACCGATGGCCCTGTTATGGTTAAATGTATCCATGGTGAAGAACTGTCTTATCCAACCACTGAAGTGTATTTAGGGGTTGAGGGGCAAACTTACCTAATGAAAGTGGGGCTAGCACCAAAACTGCCTTATCCTGTGATCATTGGTCATGACTTTCCTGTGTTAATGGACTTATTGCAGCCAAGTAATACCTGTAATGTGGTGTTAACTCGTGCAAAGTCTAAACAGAGCCAGGAGGTGAATGAGACAAATTCTTTGAAATGCCTGCCTTTTTATGACTGTGATATTACAACCCATCCAGTGAAACCTGTAAAGTCTAAAGCAGAGAAGAGGTTAGACAAGTTTCAGGGAACAGTGGTGCAAGTCACAGATGGAGGGAGCTCAGAAAACCTTAATTTAGAGTGGCAAATCCCTGACAATATGTCTGAACTGCAGAAAACTGATTCTGAAATTGGTTCCATTTATTCTAGAATGACAAATGTAAAGAAAGACAAAGAGATGGTCTTCTTTAAAGGTTCTACTTTCTGTCTAGAGAATTATATTTTGTATCGTAAGACTCGAAACAGACAACAAATGGTTCTTCCTATGAGTGTACGTAACATGGTGTTGAAGATGGGGCATTCTATCCCCTGGGCCGGTCATTTGGGCCGTCGTAAAATGTACCACCGAATCAGTAAACACTTTTTCTGGCCAGGGATGACCCAGAATATAGCTAAGTTTTGTAAGATGTGTCCAGAATGCCAATGTACAGCCCCTCGTGGTCCTCCAAAAGCTCCCTTGATGCCTTTGCCAGTAATAGAGGAGATCCTGACGGACAGAGGAACCAATTTTACCTCAAAACTGCTGCAACAGGTCTATCAATTGCTGGGTATAAGAGGTTTGAAGACCACACCTTACCATCCTGAGACCGATGGTCTTGTAGAAAGATTCAATCAAACCCTTGTTCAAATGCTCCGTAAATTTGTGAGTGACACAGGATCTGATTGGGATCAGTGGTTACCTTACTTACTTTTTGCGTATAGAGAAGTTCCACAGGCTTCTACAGGTTTCTCTCCCTTTCAATTGATGTATGGCCATGATGTGCGGGGTCCTCTGTCGTTGTTGAAAGAGTCCTGGGAGCAAGTTTCACAGACATCTAGAAAGGTGAATGTCATTGATTATGTGTTGCAAATGAGGGAGAAATTGGAGAGAATGACCAAGTTGGCAGCAGAACACTTACAAGAAGCACAGCGTAGGCAGAAATGCTGGTATGACAAGAAAGCAAGGCAGCGGTCCTTTGAAATAGGTCAGCAGGTTTTAGTCATGCTTCCAACAGAAGAGAATAAGCTGTTGGATAAATGGCAGGGTCCATTTAAGGTGACCAGGAAGCTAGGACCTGCAACCTACGAAATTGCTACTCCTGGTGGGTCACGTTCTCACAGAACATTACATATTAATCTCTTGAAAGAATGGTTTCCACAGAAAGAGTCTGCAAGTGTGAATTTGATTCGGCTAGTGGAAGATGAAGAAGAGACCAAAGAACAGTACCTATCTATTAGTCAGGATACCTCCTCAGTTAATCTTGAACACTTATCAGGGGAGCAGAAAAGACAAATTCAAGAGTTATGTGATCCAAAACTGTTTAGGAATACTCCTGGTTGTACCTCTCTCATTCAGCATCAAATTGTGTTGAAATCTAATGCTCAAGTAAAAAGAATGAGTTATCGTATTCCAGAAAAGATGGTTCCTGATTTTGAGAAGATGTTTGTGCTTCAGACAGATGCTTCTGAAGTGGGTTTGGGTGCTGTCTTGAAACAAGAGCAGGGAGGGAAAAAAGCTGGCTCCGGTGGCGGCACATTCAAATACCAAGGTGGAGAGAGGGCAAGGCGGTTTCTCGCAAGTAGCGCAGCTGTTCACAGATCCAGTCAGCTGCTAAGGCCGATGTTAAATCTTCAGGATATGGTTGTGTCACCGGGAACTTTTCAAGACTCTCGCTCGCCCCATATTTCAAGAGTTGTAATCCAAAAGGCTTACCACTGTGGTTTTCCGCTGTTAAAACTTATATCCCATTTAATAATATTGCCAGCGTTATCCACTTTCCCGGATCACCGGAGGCAACACAGTTCTTCTCGCGCTGTCGTTTGGTGTTCAGGCGATCTCTGTAGATTTTTTCATGAGACTGAAAAGCCATCCACTGCTGCTCAGACAGCGGACAAACATACTGCTGGAAAGTCGAAAGCTCTTCTCCCGGTGGATGAAATCCACTGGAGAAATCATGAGGTAGCGACGACTGTTGGTATATTCTCCCGGCGAGTAGTGGTTGTTTGTATGCAAGCTTGATTGTTGCAATCAAACACATAGTCCATAATAGTTGCCAAAGCATCTTATCGGCACCTATTGCATTAACAATGGCAATTACAACGGGTGTGATTGTTTAGTTTGACCAAACAACATTGTGGCGTTCGCGTGCACGCGACCTACGACCTGCCGCCATCTTGACACACACACACACACACACACACACACAGAAAGAGTGAGACTGAGGGAGTGAGGGGGGACAGAGAGAGAGAGAGTGTGAGATTCAGAAGAAATATTTAAAAAACAAAACAAATATATTGATCTGAAATATAGTACATTCATTTTAAATTCATCCAGGTTGAATTACCAAACATACAATCATAGTTTAAATCAAACAATGATTTCACAATGATTTTTTTTGTCCATACTTTAAACCCTGGCCATGGCAACACCATTCGAGATATCCTATAATCGTTTGCAATTTAGCATCTTCAGTATCTTGTCATCTTGTTCAGAAAGTTTGGTGGCGATTGCATGAATCCCCTAAGAGGAGTAGGTAAAATTTCAGAGCTTGTTTATTAAAAAAAACCCACATTCAAACCAAAATATCTGACTTCCTCTTTGGCGACTATCTTGAAGACCATAAATTTCGCCGCCGAGAGGCTGAGTAGGGGAAACTAACTTGTTGGACGTGCTTCCTTGTAATGATCATTGATCCAAAGACTTCGTTTTCAAGATTTATTTGCATAAGTAACAAACAAGGTTGTGCATCTAGTACATGCATCCAAAAGTCATGATGAACTGCATTTAGAAGCTTTATAGCAGTCAGCAAAAATAAGCCTTCCCCCGTCACCCCTTCTCTCCATGCACAAACACACAGGTGAACAGAGGATATACTTTTACTACTTCCACAATCACCAGGTGCCGTAATCACCGTAAGTGACCAAAAAAATGTGTTCAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463914 lncRNA downstream 27345 60419 ~ 162795 (+) True G403595
TU464350 lncRNA downstream 517427 550501 ~ 550742 (+) True G403952
TU464363 lncRNA downstream 549682 582756 ~ 583123 (+) True G403965
TU464369 lncRNA downstream 569758 602832 ~ 603583 (+) True G403971
TU464416 lncRNA downstream 616341 649415 ~ 649814 (+) True G404016
CI01000299_00005753_00010092.mRNA mRNA upstream 2558 5635 ~ 10225 (+) True CI01000299_00005753_00010092
CI01000299_00042567_00045857.mRNA mRNA downstream 9380 42454 ~ 46191 (+) False CI01000299_00042567_00045857
CI01000299_00053877_00063101.mRNA mRNA downstream 18877 51951 ~ 63500 (+) True CI01000299_00053877_00063101
CI01000299_00069742_00072011.mRNA mRNA downstream 36568 69642 ~ 72084 (+) False CI01000299_00069742_00072011
CI01000299_00082987_00089134.mRNA mRNA downstream 49649 82723 ~ 89594 (+) True CI01000299_00082987_00089134
CI01000299_00097393_00132755.mRNA mRNA downstream 64319 97393 ~ 132755 (+) True CI01000299_00097393_00132755
TU463894 other downstream 2388 35462 ~ 72271 (+) True G403578
TU463889 other downstream 36600 72177 ~ 72271 (+) True G403578
TU463930 other downstream 331065 364139 ~ 410788 (+) True G403609
TU464370 other downstream 571796 604870 ~ 606350 (+) True G403972
TU466101 other downstream 3121523 3154597 ~ 3155174 (+) True G405609

Expression Profile