RNA id: TU463889


Basic Information

Item Value
RNA id TU463889
length 95
RNA type TUCP
GC content 0.43
exon number 1
gene id G403578
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 35462 ~ 72271 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGAGATACAAGTCAACTGTGTTCCAGGATGATGTAAATATATCGAAGGGGGAAAAACAAACAAAAAATGGGAGGATCAGAATCAAAGCCAATGCAACAAGAAGTGCATCAACCAAAACCAAATCCAGAACTGGATGAACCATGGAGGAAATTTGACTGGGGACAGAAAGAAGCTCTGAAAGAAAAGCTGGAAAACTTCTCTCTGAGTGATCCAGATGTAAACCACATCAAGATCCTGGTAGCTGGACAAGTTGGAGCAGGAAAGTCCAGTTTTATCAACTCCATCGATAGTGTCTTTCAAGGACGGATCTGCTCTAGAGCGTTAGTTAATACAGCTGCTGGTGACAGTCGTAGTTTCACACAAAAGCTCAAAGGATTCCCCATCAGAAGTGGGAGAAAATCTTTGCCTTTCGTCTTCAAGGATATAATGGGCTTAGAAGCTGAAGCTTTGGCTGGGTCACAAACAGATGACATTATCAATGCTCTGTTTGGCCATGTGAAGGACGGCTATAAATTCAACCAGGAGCAGGCACTCACTTATAAGGATCAGCATTACACCAGTGACCCTACCCTCTCCGATCAGGCTTTCTGCCTGGTTTATGTCATANN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464350 lncRNA downstream 478230 550501 ~ 550742 (+) True G403952
TU464363 lncRNA downstream 510485 582756 ~ 583123 (+) True G403965
TU464369 lncRNA downstream 530561 602832 ~ 603583 (+) True G403971
TU464416 lncRNA downstream 577144 649415 ~ 649814 (+) True G404016
TU464546 lncRNA downstream 998337 1070608 ~ 1075893 (+) False G404137
CI01000299_00053877_00063101.mRNA mRNA upstream 6174 51951 ~ 63500 (+) True CI01000299_00053877_00063101
CI01000299_00042567_00045857.mRNA mRNA upstream 23483 42454 ~ 46191 (+) False CI01000299_00042567_00045857
CI01000299_00013442_00032151.mRNA mRNA upstream 36600 12783 ~ 33074 (+) True CI01000299_00013442_00032151
CI01000299_00005753_00010092.mRNA mRNA upstream 59449 5635 ~ 10225 (+) True CI01000299_00005753_00010092
CI01000299_00082987_00089134.mRNA mRNA downstream 10452 82723 ~ 89594 (+) True CI01000299_00082987_00089134
CI01000299_00097393_00132755.mRNA mRNA downstream 25122 97393 ~ 132755 (+) True CI01000299_00097393_00132755
CI01000299_00151569_00153623.mRNA mRNA downstream 79248 151519 ~ 154472 (+) True CI01000299_00151569_00153623
CI01000299_00255175_00294177.mRNA mRNA downstream 182904 255175 ~ 294177 (+) True CI01000299_00255175_00294177
CI01000299_00315123_00328550.mRNA mRNA downstream 242852 315123 ~ 330163 (+) True CI01000299_00315123_00328550
TU463930 other downstream 291868 364139 ~ 410788 (+) True G403609
TU464370 other downstream 532599 604870 ~ 606350 (+) True G403972
TU466101 other downstream 3082326 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 4058987 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 4223262 4295533 ~ 4320141 (+) True G405842

Expression Profile