RNA id: CI01000299_00169255_00170695.mRNA


Basic Information

Item Value
RNA id CI01000299_00169255_00170695.mRNA
length 1397
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01000299_00169255_00170695
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 169223 ~ 170986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAAATGTAGGAAAAAGCTTACATAAATGTTATTCCATCAAGGCCACCAAAAAAAATGAAAAGGTGCAAAAGAACTGCAGAGTGCAAAAAGTTTTCAGGTTCAACCCTTCGTCAAGCCACAAAAATATATTACAGAAAACACTTCAGGGAAAATTCCTTATTCTGACCCTGAGGTTATAAAGACTTCAAGTCAAAAATCCCTTTACAATCGCTCTGTAAAAGTCTATGTTCAATATTACCTCATCCTCAATGACGTATGATTTGTTTGATAACTATGTATATAAACTAAAATGTACCTGATTATAATTAGATGTCGAGAAATGAAACCAAGAACAACCATGCAGAGAAACCTTTACTACGGCTCGAGCAACAGCTCAAATGACAACTGCACCAACGTGGACGATGTCGTGAAGCGCTACTACTTGCCTGCCATGTACGGCACGATCTTCATCGTGGGCGTCGTGGGTAACGTCATCGCTCTGCTGGTCTACTTGCTCAAAGTTCGTCCCTGGAAGAGCAGCACCATCATCATGGTGAACCTCGTCATCACTGACCTTCTCTTCATGGTCAGCTTGCCCTTCTTGACCTACTACTACGTCCGCGACGACTCATGGACGCTGGGGATCGTCATGTGCCGCTTTGCGCGCTTCATGTTCCACTTCAACCTCTACGGCAGTATCCTCTTCCTCACCTGTCTTGCCATCTTCCGGTACGTGGCGATCGTGCATCCGTCGCACATGCACAGCATCAAGCAGAAGCGATGGGGCGTGTTGGCTTGCGTCCTGGTTTGGGCTGTGGCGGTGATCGAGTTAAGTCCCATTTTTAACCTGTTTGACATGGTTGAACAAAACAACAAGACATACTGCTTGGACTTGGCGAGCAGCAACCCAGGAATCATGTGGCCGTACAGTTGGGCATTGACCGTACTGGGATATTTGCTTCCTCTGGTCGTGGTCTGTCTTTGCTATTGGCGCATCATTGTGGTACTAAAGAAGGGTCCTCATATGGGAAGCATGAAACGGGTTCGAGCAAGGCGACTCATCGTGCTGATATTGACGTGCTTTGTGGTTTGCTTTTTTCCCTATCACGTGCTACGCGCTCTGAGAATCCACACGAGACTCACTCCGGAAACCGACTGCATGCTGGACCGCTGCGTTCACGCCGCCTACATTATTTCGAGGCCGATCGCTGTACTCAACATCATTTTCAACTTGCCGCTCTACACGTTGTCGGGGGATTGCTTTAAACAGGCCTTCGTGGAGCTGTTCAAATGTGATTGGCTCATGTCGAGGACTAAGGGGATCATTGAAGTGGCTGTGATCAGCAAATCCACGACCAACATCACAAACGAACAAAGCAGCTGAGACTCAAGCTGGTGTTTCAGTCTTCCACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464043 lncRNA downstream 6307 60302 ~ 162916 (-) False G403707
TU464098 lncRNA upstream 63054 234040 ~ 234262 (-) True G403737
TU464136 lncRNA upstream 68551 239537 ~ 239755 (-) True G403772
TU464099 lncRNA upstream 69227 240213 ~ 240461 (-) True G403738
TU464137 lncRNA upstream 70164 241150 ~ 242770 (-) True G403773
TU464138 lncRNA upstream 71840 242826 ~ 243621 (-) True G403774
CI01000299_00185106_00209299.mRNA mRNA upstream 13788 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00448948_00449565.mRNA mRNA upstream 277877 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 280355 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 499694 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 832333 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
TU464604 other upstream 499848 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 899621 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1488669 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1684653 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1846701 2017687 ~ 2018050 (-) True G405053

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001502 True 1290 mRNA 0.46 2 NC_007112.7 2048047 ~ 2051599 (-)