RNA id: CI01000299_00452374_00452868.mRNA


Basic Information

Item Value
RNA id CI01000299_00452374_00452868.mRNA
length 1528
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000299_00452374_00452868
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 451341 ~ 452868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCATTTTTAGTGTCTTTTCCGCGGTGCACATGACTCAAATCTTCGTGTACGGGACACTAAAGAAAGGCCAGCCCAACTACTTCAGGATGACGGACCCTGCCAACGGTCGGGCCGAGTTTGTAGCTCACGCTCGCACAGTGGAGCGATACCCGCTCGTGATCGCCACCAAAGACAACTTCCCCTTCCTGCTCAACGTCCCTGGGAAGGGTCAGCGCGTCCAGGGCGAGATCTACAGCGTGGACCAGAAGATGCTGGAGTTCCTGGATGAGTTTGAAGAATGTCCAAAGTTGTACCAGCGCACAACTGTCCAGCTGGAGGTGCAGGACGGGCTCGGTGAAGGGGAAAACACGCTGAAGTCTGGAAGTTTCGTCAATGCCTCTGTGTACAGCACGACTACATATGAACCCGAGTGGCTCCAAAAACCAACATATGAGAGTTATGATGCTCACGGTGATCACGGGCTGTGTCCTGAAGACAGATGCTTTCTACTGTAGTAACATTTACCAGGGTTTTACCACACCTGCCAGTGTCACATGAATTTAATTTACCATTCAGACATTTTGAAAAAAAGAAGAAAAAAAAAAAAAGAAGAAAAAATATTTTCACCAAAAGGTGTGGTTTTGGTCATCTCATATTCACATTTCTCAGGGAATCTACCAGTCACAACAGAGTTTCACATGCTGATGTTGCAATTTTGGTTCCAAATATTTTAGCAAATTAATGAGAAAATAGAAGCTGGGGAGGGGGAGGGGAATCTTGAGTCGCCCTAGATCAACTTCTGACAGTACTGTATATTATCGGCTATGTAAAATGTTATCTGCAGATGTTTTAGATAATTTCTTTAGACATTATGCCATTTTAAATTGTGTGCTTTACATTTACACTTAAAACCGTTACTGGTTTTTTTTTAGTACTGGAAGCCCATTTTTAATTTTTTGGCACTTGACAAGTGTTATTTTAATGTGGTCAGATGGCATTATTAATTTGTTGCTGTGTTATATAAATATGATAGTCAGCCAGTACTGTGGTTTGTATGCTACAAACACACAAAACATTACCATGTTTATAGGGCACATCTATATATTCATATATGTATATACACTGTCATTCAAAAGTTTGGGATCAGTAAGATTTTTACTGTTTTTAAAATAAGTCTCTCACCAAGTCTGCATTTATTTAATAAAAAACAACAACAAAAAAACAGTAATATTGTGAAATAAGTACAATTTAAATAACTATTTTTCTATGTGAATATTTTTAAAAATGTAATTTATTCCTGTGATTTTTAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTGTAATATGCTGATTTGCTTCTCAGGAAACATTTCTGATTATTATCAGTGTTAAACTGTTGTGCTGTTTTTATTAAAATTTTTATTTTTCAGGATTCTTTAATGAATAGAAAGTTCAAAACAGCATTTATTTGAAATAGAATCTTTTGTAACATATGCTGTGGATGTTTTCTAAATTGCACTTTACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464230 lncRNA downstream 4862 444789 ~ 446479 (-) True G403838
TU464233 lncRNA downstream 12555 438309 ~ 438786 (-) True G403841
TU464232 lncRNA downstream 17752 433359 ~ 433589 (-) True G403840
TU464250 lncRNA downstream 21376 429635 ~ 429965 (-) True G403858
TU464249 lncRNA downstream 21912 428433 ~ 429429 (-) True G403857
TU464258 lncRNA upstream 13806 466674 ~ 466935 (-) True G403866
TU464259 lncRNA upstream 14282 467150 ~ 467350 (-) True G403867
TU464267 lncRNA upstream 25102 477970 ~ 478252 (-) True G403874
TU464268 lncRNA upstream 25676 478544 ~ 479150 (-) True G403875
TU464307 lncRNA upstream 72653 525521 ~ 525854 (-) True G403913
CI01000299_00448948_00449565.mRNA mRNA downstream 1584 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00185106_00209299.mRNA mRNA downstream 242042 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 280355 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00670925_00672195.mRNA mRNA upstream 217812 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 550451 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 604952 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01114487_01122666.mRNA mRNA upstream 660882 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01222994_01268707.mRNA mRNA upstream 769991 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
TU464604 other upstream 217966 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 617739 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1206787 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1402771 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1564819 2017687 ~ 2018050 (-) True G405053

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001509 True 2240 mRNA 0.38 2 NC_007112.7 2450140 ~ 2453174 (-)