RNA id: CI01000299_00795673_00796901.mRNA


Basic Information

Item Value
RNA id CI01000299_00795673_00796901.mRNA
length 768
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01000299_00795673_00796901
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 795673 ~ 797157 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTCTTTCTGGAGTTGCTGGACAACTCGGAAAAGTCACTCAACGACATGTTTGTGCGCACATATGGCAAACTGTACACTCACAACTCAGAGATGTTTGAGGACCTGTTCTCTGAGCTCAAGCGCTACTACACCGGCGGCAACGTCAACCTTGAGGAAGTGCTGAATGACTTCTGGTCGAGACTGCTGGAACGCATGTTTCAGCTGCTTAACTCTCAGTACACGTTCACTGACGACTATCTGGAGTGTATCAGCAAATACACAGACCAGTTAAAACCCTTTGGAGATGTTCCTCGCAAGCTCAAGGCCCAGGTCACCAAGGCCTTTATTGCGGCTCGCTCGTTCGTTCAAGGACTCATGGTGGGTCGGGAAGTGGCCAACAGAGTGGCAAAGAAGCCGTGTATGAGCTTTGATGTGACAGCTGCACGCCGGACAGGTTATGACATCAGTGATGAGGCGAGATGGCCTGCGGAGCAATGGACGGTTTCTGAAGGGAAGATAAAAGCGTGCTGACTGGCAGCCGCAGCGGGCATCTCTGCTCCATCTCTCAGATCCGTCTTTGATAGCTCGTCTCAATCACATTTTCCGCTGGATGTTTTGCTGTTTAATGGCTTACTGGATGATTATAAGCATTATTGACAGATTTCCTACCGAAAAAGCTCAGAGAATGTAGTGAGGCAGCCAGGCCTGGTCTGTTTGGAGTGGTTTTGCTGAGGTAAAATGTAGATAAGCTGCTTTTGTATTTGTGTCATCTGTAATGCCAACGGTA

Function

GO: NA

KEGG:

id description
K08112 GPC6; glypican 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464416 lncRNA upstream 145859 649415 ~ 649814 (+) True G404016
TU464369 lncRNA upstream 192090 602832 ~ 603583 (+) True G403971
TU464363 lncRNA upstream 212550 582756 ~ 583123 (+) True G403965
TU464350 lncRNA upstream 244931 550501 ~ 550742 (+) True G403952
TU463914 lncRNA upstream 632878 60419 ~ 162795 (+) True G403595
TU464546 lncRNA downstream 273451 1070608 ~ 1075893 (+) False G404137
TU464547 lncRNA downstream 273451 1070608 ~ 1075769 (+) True G404137
TU464483 lncRNA downstream 326422 1123579 ~ 1125274 (+) True G404074
TU464484 lncRNA downstream 328583 1125740 ~ 1127444 (+) True G404075
TU464805 lncRNA downstream 344199 1141356 ~ 1141636 (+) True G404385
CI01000299_00689032_00727635.mRNA mRNA upstream 67837 688906 ~ 727836 (+) True CI01000299_00689032_00727635
CI01000299_00419297_00444862.mRNA mRNA upstream 349785 419297 ~ 445888 (+) True CI01000299_00419297_00444862
CI01000299_00345042_00361660.mRNA mRNA upstream 433587 345042 ~ 362086 (+) True CI01000299_00345042_00361660
CI01000299_00315123_00328550.mRNA mRNA upstream 465510 315123 ~ 330163 (+) True CI01000299_00315123_00328550
CI01000299_00255175_00294177.mRNA mRNA upstream 501496 255175 ~ 294177 (+) True CI01000299_00255175_00294177
CI01000299_00826470_00828773.mRNA mRNA downstream 29276 826433 ~ 828960 (+) True CI01000299_00826470_00828773
CI01000299_00862803_00911972.mRNA mRNA downstream 65646 862803 ~ 911972 (+) True CI01000299_00862803_00911972
CI01000299_01036243_01046776.mRNA mRNA downstream 237880 1035037 ~ 1047603 (+) True CI01000299_01036243_01046776
CI01000299_01049508_01055558.mRNA mRNA downstream 252233 1049390 ~ 1055736 (+) True CI01000299_01049508_01055558
CI01000299_01139684_01147241.mRNA mRNA downstream 342340 1139497 ~ 1147248 (+) True CI01000299_01139684_01147241
TU464370 other upstream 189323 604870 ~ 606350 (+) True G403972
TU463930 other upstream 384885 364139 ~ 410788 (+) True G403609
TU463894 other upstream 723402 35462 ~ 72271 (+) True G403578
TU466101 other downstream 2357440 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 3334101 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3498376 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 3692661 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 3905225 4702382 ~ 4702508 (+) True G405864

Expression Profile