RNA id: CI01000299_00862803_00911972.mRNA


Basic Information

Item Value
RNA id CI01000299_00862803_00911972.mRNA
length 612
RNA type mRNA
GC content 0.52
exon number 4
gene id CI01000299_00862803_00911972
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 862803 ~ 911972 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCTGCTGGTGGCTGACAGACTGGAAGGGCCCTTTAACATTGAGGCCGTCATGGAGCCGATAGATGTAAAGATTTCAGAGGCCATCATGACCATGCAGGACAACAGCATGCAAGTTTCATCCAAGGTATTCCAAGGATGCGGTCATCCCAAACCAACTGGAATCGGCCGATCTGCCCGCGGGATCTCGGATGTGTTCAACAGTCGCTTCAGACCTTACAGCCCAGAAGAGAGGCCCACCACGGCAGCCGGCACCAGCCTGGACAGACTGGTGAGTGGGTGGCAGGGAGGGCAGAGTGGGGCAGTGATCGACATTAAGGAGAAGCTAAAGGAGTCGAAGAAATTCTGGTCGTCGCTGCCAGACAGCATCTGTGCAGAGGACAATGTGACTGACCCAGATGAGGAGCAGTGCTGGAACAGCCACACAAAGGGAAGATATTTTCCTGAAGTTGTAAAAGACGGCCTTACGAACCAGCTTAATAACCCAGAGGTGGAAGTGGACATCACAAGACCAGACACCTTCATCAGACAGCAGATCATGACCCTGCGAGTGATGACCAACAAGTTACGAAACGCCTACAATGGCAAAGACGTCTACTTCCAAGACTCGAGT

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component

KEGG:

id description
K08112 GPC6; glypican 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464416 lncRNA upstream 212989 649415 ~ 649814 (+) True G404016
TU464369 lncRNA upstream 259220 602832 ~ 603583 (+) True G403971
TU464363 lncRNA upstream 279680 582756 ~ 583123 (+) True G403965
TU464350 lncRNA upstream 312061 550501 ~ 550742 (+) True G403952
TU463914 lncRNA upstream 700008 60419 ~ 162795 (+) True G403595
TU464546 lncRNA downstream 158636 1070608 ~ 1075893 (+) False G404137
TU464547 lncRNA downstream 158636 1070608 ~ 1075769 (+) True G404137
TU464483 lncRNA downstream 211607 1123579 ~ 1125274 (+) True G404074
TU464484 lncRNA downstream 213768 1125740 ~ 1127444 (+) True G404075
TU464805 lncRNA downstream 229384 1141356 ~ 1141636 (+) True G404385
CI01000299_00826470_00828773.mRNA mRNA upstream 33843 826433 ~ 828960 (+) True CI01000299_00826470_00828773
CI01000299_00795673_00796901.mRNA mRNA upstream 65646 795673 ~ 797157 (+) True CI01000299_00795673_00796901
CI01000299_00689032_00727635.mRNA mRNA upstream 134967 688906 ~ 727836 (+) True CI01000299_00689032_00727635
CI01000299_00419297_00444862.mRNA mRNA upstream 416915 419297 ~ 445888 (+) True CI01000299_00419297_00444862
CI01000299_00345042_00361660.mRNA mRNA upstream 500717 345042 ~ 362086 (+) True CI01000299_00345042_00361660
CI01000299_01036243_01046776.mRNA mRNA downstream 123065 1035037 ~ 1047603 (+) True CI01000299_01036243_01046776
CI01000299_01049508_01055558.mRNA mRNA downstream 137418 1049390 ~ 1055736 (+) True CI01000299_01049508_01055558
CI01000299_01139684_01147241.mRNA mRNA downstream 227525 1139497 ~ 1147248 (+) True CI01000299_01139684_01147241
CI01000299_01197545_01215711.mRNA mRNA downstream 285450 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_01855614_01858092.mRNA mRNA downstream 943642 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
TU464370 other upstream 256453 604870 ~ 606350 (+) True G403972
TU463930 other upstream 452015 364139 ~ 410788 (+) True G403609
TU463894 other upstream 790532 35462 ~ 72271 (+) True G403578
TU466101 other downstream 2242625 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 3219286 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3383561 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 3577846 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 3790410 4702382 ~ 4702508 (+) True G405864

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000110 True 2021 mRNA 0.54 10 NC_007112.7 2712956 ~ 3036019 (+)
bowfin (Amia calva) AMCG00014638 True 564 mRNA 0.50 4 CM030128.1 24888533 ~ 24897009 (+)