RNA id: CI01000299_01003547_01034507.mRNA


Basic Information

Item Value
RNA id CI01000299_01003547_01034507.mRNA
length 1469
RNA type mRNA
GC content 0.48
exon number 5
gene id CI01000299_01003547_01034507
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1003319 ~ 1034812 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTACTTATTTCTCTTTATTTTGATTGTGGCTGTTTTAAGTTTGCATCACTGCATTTTTGCACAGAGAAAACTGAGGGATGGGTGTAAATTTCTCATTTGGTGATCAACAAAAATCATTTGCCATGCACAAACCAAATAATATGTGTGGTGCGTAATGATGCCATGAAGATGTTCATCCAGGTCCGGAAATCTCCCAGCTTGCCATGTTGAATAAACATTGTTGTGTCACAAATTCAATGCATATGTAAGTATTTCCACTGAGCCATTCAACGCCGTAGGAAGGGACTGGCAGCTAGGAAGGGGATGTTATCTGCGTCTAATGAAGAGCACTTGTGTGAGTGTGTTTCCGTGGTAACGGAATCACTCTTCCGTGATTGTCCACGTGAAAATGACTCCGTCGAGATGCCATGTGGAAACATAAATATGGACAGCAGACAGGACCAGCATATTGTGATGATTGGCACCCGCGAGTCACCTTTTACCCTTGAACGCGCTGTGGAGGGTCTCATTCGCTTGTCAGTTTGCTTTCGGATGCTGCTTCTTTGGAAAAGCAAACCTGGAGAAGCTATCACAGAAGTTCACGCAAAACCATGTCCCACCAGGCCTAAAGCAAGCAGTCGTTTAGTATCTGTTCAGCTAGACAGGAAACACAGAGCAAGGAGCACCGCCATGGGTTTGAAAGTTATTCAGATGAGTGTGTGGAAAGAGCTGGAATGGCTAAGTGACAGCCCTGAGCTAACACACCTCTTCTGCCTTAAGCTGGAATCAAAGCGGGAAGTAAAGCAGCAGAGGAGACAGCTCAGTGCTGTTGTGAGGGGCTTTTTGTCTCACATCCTCCATTCAGACACACCGCTGAGCTACACTCTGCGAGTGGTTGGCAACGGGATTAAAGCCCAGGCAGAAAACCCAGAAGTCAAAGTGAAGGAGGCCGACCCGGTGATCAATCAAGTCATTGATAAACTGAAGCACATCAATCAGCTGGTTAATTTGTACACCTCCAAAAAACATCCCAAAAAATTCCTTGATCCCTCACGTCCCAGAGCGGCCATCAGTTTCATGTGCTGTCAGCCCTGTTACCCCAAACGCCGGTGGCCCATATTGCATTTGCGTTGTGCTGTGAGGTCACGCTTGCATGGCATCCCTGGCATCCCTGGAGATGAATCCACTTCCTTTACAAATCAGCCTAATCCTGGAGGCGTCCCGTTCGGCCAGCGTTTGCCCCAAGGAGCCGCTAGATAAGCAGCCAGGAGTCCCGAGCTTCGACGTTTTTAATTACGACGAGATCTCATGAGATATGCAGGAAAGGGGGGGCGGCGTTGTAGGCTTTAAAATCGTGTCTCTCCAGCTGTTGTTTGCTGTCAAAGGTGGGGCTGGGACAAGACAGATAGCGGCCCTCCGAGACCCTGAGTGATTTAGGAGATACGTGACCAGAAAGGCCCTGTTAGCTTGCATTGGTGCTTATATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464603 lncRNA downstream 278031 723546 ~ 725288 (-) True G404190
TU464580 lncRNA downstream 397737 605073 ~ 605582 (-) True G404169
TU464578 lncRNA downstream 402318 596568 ~ 601001 (-) True G404168
TU464576 lncRNA downstream 416972 586146 ~ 586347 (-) True G404166
TU464572 lncRNA downstream 447256 555853 ~ 556063 (-) True G404162
TU464713 lncRNA upstream 90924 1125736 ~ 1127433 (-) True G404293
TU464800 lncRNA upstream 96231 1131043 ~ 1131262 (-) True G404380
TU464878 lncRNA upstream 112644 1147456 ~ 1147727 (-) True G404457
TU464916 lncRNA upstream 162629 1197441 ~ 1198241 (-) True G404484
TU464918 lncRNA upstream 164545 1199357 ~ 1200671 (-) True G404486
CI01000299_00670925_00672195.mRNA mRNA downstream 329694 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_00452374_00452868.mRNA mRNA downstream 550451 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00448948_00449565.mRNA mRNA downstream 553562 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00185106_00209299.mRNA mRNA downstream 794020 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 832333 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_01057889_01063623.mRNA mRNA upstream 23008 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01114487_01122666.mRNA mRNA upstream 78938 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01222994_01268707.mRNA mRNA upstream 188047 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01338052_01368900.mRNA mRNA upstream 303060 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01419938_01421048.mRNA mRNA upstream 384717 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
TU464604 other downstream 330463 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 35795 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 624843 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 820827 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 982875 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 3106306 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001512 True 1635 mRNA 0.55 8 NC_007112.7 3100244 ~ 3295045 (-)