RNA id: CI01000299_01036243_01046776.mRNA



Basic Information


Item Value
RNA id CI01000299_01036243_01046776.mRNA
length 2831
RNA type mRNA
GC content 0.35
exon number 5
gene id CI01000299_01036243_01046776
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1035037 ~ 1047603 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAAAATTTGTTATTAAGTGCAACGTTTCAGTCCTATGACCTTCGGCCCTATGACCATTTTTTATGTTTCTGAAAGTCTCTTATGTTCAGCAAGGCTGCATTTATTTGATCAGAAACACAGTAATATTTACAAATATATTAAATTTAAAAGATCCGTTTTCTATGTAAATATATTTTAAAATATTCCTGTGATTCAAAGCTGAATTTTCAGCATCATTACTCCAGTTTTCAGCGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGAAATATTTCTTATTATTAGCAATGTTCAAAACAGTTGTGCTGCTTCATTTTTTTATTTTATTTATTTATTTATTTTTTGGTGGAAACCGTGATACATTTTTTTTTTTTCAAGATTCTTTGATTAATAGAATAGAACAGCATTTATTTGAAATATAAATCTTTTGTAACATTATAAATGTCTTTACTTTCACTTTTGATCTATTTAATATGGAAGCTTGTTTCCGCCACTAAATAAAAAATAAAAAAACTTTATCTCACAATTCTCACTTTTTCTCGCAATTGTGAGTTTGCATTTCACAATTCTGACTTTCTTCTCAGAATTGTGAGATTTAGACTCACAAATGCAAGTTATGAAGTCAGAATTGCATGTTATAAAGTCACATTTCTGACTTTTTTTCCCTCGCAATTCCGAGTTTTTATCGTGCAATTCTGACTTTTTTTTGTGAGATATAAACACAGTTGCGAGTTATAAAGTCAGAATTGCATGATATAAACTTGCAATTGTGAGTTTATATCTCGCAATTCTGAGAAAAAAGTTTTTTACTTTTTATTTCATGGTGGAAACAAGCTTTCATAGTTTAAGGGATCATTGCCGAATAAAATTTTTTTTTTTCCTTCAAAATTTCTTTTTTTTTTTTTCTTTAAATGAGTGCATAAGTCTATTTACTTATTAGACAATATTTACTTGTCTAAATAATGTTATGTCTTAAATGCGGTCAACAGAGCTAAACATAAATTAATTTAATGATTGGACCCCAATTATGACATGGAACTATCTGAAATATTTCTGTACAGTCCAGCTACTATTCACGCAACCCAAGATGGCTTTGGTGCAGATTGTGTTCTTGTGTATCATCATGTCATAAAAACCAAGTAAAGTAGTTTTCTGTTTACTTCTGTAGGGTTTCATTCACTCATGCAACCGCAGATGGCCTTGGGCGCTCGTGTTCAATCTCTGTCTTCATCATTTAAGATGCTTCGGTATCATCTGAGGGTCTCTCGGCCGTGGCCCGTCTCTCTGGATAAGGGCACTCAGTCTCTGACCCCTCAAGGCTTTCAAACCTGTGCTATAGCTCCAGACTGTCAAATGAAACAGGGAATTCACGGCAAACCTAAACAGTTCTCCACCATCCACATGTTTCCTCTGAGGACCGCAGATATACAGCACTTTTCAGATTGTGTCTTGAGATCAGGGAGAGATTATTGGAAGCTGCAGAGCAAGAAAAAAAGAGGTATGACAAATGCACGGCAGAGAACCACGCTATCTGACAAATTAGATACTACGAGGACAAACAGGACCTGCTTTAGAAAGGCTGTATTAAGCTGGCAAATAAATAAGGATTGTGGCCGTCAGTCTGCACGGGTTGGCAAACAGAAACACGTGTTTGGGCTCTTGTACCTCTCTGCACACCAGCTCGTTTATCTTGGCTGTCAGTTAAAGGGCAATGTATACGAAAAGGTTGGAGTCGACGGGTCACAAGGTCCACGGTTATATATTGACTTTCTATTACTTGAACCTGGGGGAGACGGTAGCGTAGAACGGTCACACCTAGACAACCAAACAAAACCCACACATTCTCACAACTACAGGGTTGGAATCAAGATCTGCTGCACCACGGTCAGAGCATCAGTTAATCTGGTTTTCACATCCGTGTGCGGATCGATCGCAGCTCGGATCACTTGTGGCTTCATTTGGCCTTGCGTGACAGCTTTTGAGCTGCTCTAAATCAAACACAACCACACACACACACACACACACACACAGGTCTAGATCTGGACTGCTGGACTGAATTAACCCGGTTTAATAAGGGGGACAAGGGACAATCCGTTTTTGAGAGCAAGACGACACTCCAAAAAAAAAAAAAAAAAAAAAAAAATTTCATTACCACACCTGTCAATGAACAGAAATTAGTTACATGGTCATATATATAATCATCCAAAGGTTTGGGTTGGTCGGTAAGGTTTTTTCTTTATGTTTTTGAAAGAAATCTTACCTGCTCACCAAGACTGCATTTATTTGATCAAAAATACAGTAAAACAATAATATTGTAAAATATTATTACAATTTAAAAAAAATCGATTTTCTAATTGAATATATTTTAAAATGTAATTTATTCCTGTGATCAAAGCTGAATTTTCAGCATCATTGCTCCAGTCTTCAGTGTCACATGATCCATCATTTCCTGAAAACAGTTACTTCATATTTTTGTGGAAACCATTTTCTGAGGATCCATTTTCTTGGTGATTTTTTCAGGATTCTGATGATTTAAAAGTTTGAAAGAACATAATTTATTTGAAATAGAAAGATTTTGTAACATTATAAATGTATTTACTGCCACTTTTAAACTATTTGTCCTTGCTACAATAAAACTAAGTTATGTTAAAAAAATGTTATTGCCTCCAAAGTTATGAATGGTAGTTTGTGAGTGTATAATGAGCTTTTTTTATGGTTATCACAATACTGATTTGCATGTAACGACACTCTGCAATTTAAATCATTTATCATGTTCCTGAATTGCTCGCTAAAGGCCTTTTTACTTTGCATTTGACGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU464416 lncRNA upstream 385223 649415 ~ 649814 (+) True G404016
TU464369 lncRNA upstream 431454 602832 ~ 603583 (+) True G403971
TU464363 lncRNA upstream 451914 582756 ~ 583123 (+) True G403965
TU464350 lncRNA upstream 484295 550501 ~ 550742 (+) True G403952
TU463914 lncRNA upstream 872242 60419 ~ 162795 (+) True G403595
TU464546 lncRNA downstream 23005 1070608 ~ 1075893 (+) False G404137
TU464547 lncRNA downstream 23005 1070608 ~ 1075769 (+) True G404137
TU464483 lncRNA downstream 75976 1123579 ~ 1125274 (+) True G404074
TU464484 lncRNA downstream 78137 1125740 ~ 1127444 (+) True G404075
TU464805 lncRNA downstream 93753 1141356 ~ 1141636 (+) True G404385
CI01000299_00862803_00911972.mRNA mRNA upstream 123065 862803 ~ 911972 (+) True CI01000299_00862803_00911972
CI01000299_00826470_00828773.mRNA mRNA upstream 206077 826433 ~ 828960 (+) True CI01000299_00826470_00828773
CI01000299_00795673_00796901.mRNA mRNA upstream 237880 795673 ~ 797157 (+) True CI01000299_00795673_00796901
CI01000299_00689032_00727635.mRNA mRNA upstream 307201 688906 ~ 727836 (+) True CI01000299_00689032_00727635
CI01000299_00419297_00444862.mRNA mRNA upstream 589149 419297 ~ 445888 (+) True CI01000299_00419297_00444862
CI01000299_01049508_01055558.mRNA mRNA downstream 1787 1049390 ~ 1055736 (+) True CI01000299_01049508_01055558
CI01000299_01139684_01147241.mRNA mRNA downstream 91894 1139497 ~ 1147248 (+) True CI01000299_01139684_01147241
CI01000299_01197545_01215711.mRNA mRNA downstream 149819 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_01855614_01858092.mRNA mRNA downstream 808011 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_02118245_02120332.mRNA mRNA downstream 1069258 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
TU464370 other upstream 428687 604870 ~ 606350 (+) True G403972
TU463930 other upstream 624249 364139 ~ 410788 (+) True G403609
TU463894 other upstream 962766 35462 ~ 72271 (+) True G403578
TU466101 other downstream 2106994 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 3083655 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3247930 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 3442215 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 3654779 4702382 ~ 4702508 (+) True G405864

Expression Profile