RNA id: CI01000299_01197545_01215711.mRNA



Basic Information


Item Value
RNA id CI01000299_01197545_01215711.mRNA
length 965
RNA type mRNA
GC content 0.47
exon number 4
gene id CI01000299_01197545_01215711
representative False

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1197422 ~ 1215989 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATATATCGCACCTAGCCTCTCTTGATAAACGTGTAGATAGCGAGCGAGCACGCACAGTCGATAATGCAGTGAGCGCGTGGGCACCGTCCATTAAATAGCAGTTAATTACCCTGCACTGGAGATGAAAGGCTCATTTGTGAAACGGCCTCCTTCTCGCGTTGATGAAATGGCTCTTCAAGTTCACACGCGTGTTCTCGTGCAAACAAATGTGCACATTCAACATGTGCAGAATCCTAATGATGCCGCTTCAATCACAGTCCGTGGTCTCGCTGGCTGGCAGGGAGGAAAAAGGATTGGAGGAGAGACCTTGGATGCAGACAGTCCTTCGGCTTGCCATCGTGGCAAAATAATCACACAAAGGTGTCTGTGTGTCCCTAGCCTGGACTTCTGGAAAAAGGGGGATGTGAGCGGAAGAGATAAAGAAGATGAGGGCTTCTGGGCAAACCCAACTCAGACATGTGGCTACCATAAATTATTAAAAGCTCATTGCTTATTCTGCCTGCTTGTCCTCATCTTTGCACTGTGTAATGGAGGCCCTGGTGAGAGGATCAAGGTTTTGGAAATAGGGCTTTTTATGATTCAGAGTCATAATCCACCCATGAGGGAGCAAAGCCCGACCCCAAGGGTAGAGGTGGAGATTGTACAGACGAGGAGGAGACGCCTTGGGAACAGAGGATGCATGTAAATTGGAGCGACTATAAGGAGTCTGAGAATTTCGAAAAGGGACTCTGGGACTAGGGTGCGCACGCCGAATGCCTTCAAAATGTGTGATAAGAAAATGGGAAATTATGCAATTCGAATGTACCTGCTTATGCTTGAGGAAGCTTATAGCCTTTAGAATTTAAAGCTGCTCTAGTCTCGCACAGCCACGCGTTTGACTATCGGCATGAAGTCTGGTGCACATTGCAGCTCATGCACACCTGAAAAATAGAGCATACCACAAAAAAAAAACAAAACAAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU464844 lncRNA upstream 1686 1195477 ~ 1195736 (+) True G404424
TU464805 lncRNA upstream 55786 1141356 ~ 1141636 (+) True G404385
TU464484 lncRNA upstream 69978 1125740 ~ 1127444 (+) True G404075
TU464483 lncRNA upstream 72148 1123579 ~ 1125274 (+) True G404074
TU464546 lncRNA upstream 121529 1070608 ~ 1075893 (+) False G404137
TU464976 lncRNA downstream 100287 1316276 ~ 1316603 (+) True G404544
TU465036 lncRNA downstream 187768 1403757 ~ 1404012 (+) True G404603
TU465145 lncRNA downstream 388354 1604343 ~ 1604683 (+) True G404709
TU465152 lncRNA downstream 415855 1631844 ~ 1632212 (+) False G404716
TU465155 lncRNA downstream 415855 1631844 ~ 1632341 (+) True G404716
CI01000299_01139684_01147241.mRNA mRNA upstream 50174 1139497 ~ 1147248 (+) True CI01000299_01139684_01147241
CI01000299_01049508_01055558.mRNA mRNA upstream 141686 1049390 ~ 1055736 (+) True CI01000299_01049508_01055558
CI01000299_01036243_01046776.mRNA mRNA upstream 149819 1035037 ~ 1047603 (+) True CI01000299_01036243_01046776
CI01000299_00862803_00911972.mRNA mRNA upstream 285450 862803 ~ 911972 (+) True CI01000299_00862803_00911972
CI01000299_00826470_00828773.mRNA mRNA upstream 368462 826433 ~ 828960 (+) True CI01000299_00826470_00828773
CI01000299_01855614_01858092.mRNA mRNA downstream 639625 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_02118245_02120332.mRNA mRNA downstream 900872 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_02195854_02198465.mRNA mRNA downstream 979809 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
CI01000299_02612562_02613926.mRNA mRNA downstream 1396510 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
CI01000299_02696797_02704180.mRNA mRNA downstream 1480643 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
TU464370 other upstream 591072 604870 ~ 606350 (+) True G403972
TU463930 other upstream 786634 364139 ~ 410788 (+) True G403609
TU463894 other upstream 1125151 35462 ~ 72271 (+) True G403578
TU466101 other downstream 1938608 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 2915269 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3079544 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 3273829 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 3486393 4702382 ~ 4702508 (+) True G405864

Expression Profile