RNA id: CI01000299_01222994_01268707.mRNA


Basic Information

Item Value
RNA id CI01000299_01222994_01268707.mRNA
length 2591
RNA type mRNA
GC content 0.39
exon number 6
gene id CI01000299_01222994_01268707
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1222859 ~ 1270326 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACTCTTTACTCACTAATTTACTAAATTTCTTTGAAATTGCATTCATTTTGTATTCCCAGTATAGAATAATTAACGGCATTTGTATTGTTTTATGTTTTTAACATTTCAAAATGAAATCTAAAATCACACTATTTACTTTCATAATACTGTAACGTGCTATGTTTTAGTTTCGTTTTCACTCTGTTTGCTCTGTTCCTATTCTCCTTAGTTCCTAGTTAGTTTCCCTGTTTGTTAATTAGTTTCCATAGTTCCTGATTCCACGCACCTGTTCTGTTTCTGCTTTGATACATTCTCTTTTACTTTTTCTGAGTATATAAGCCCTGAGTTTCCCTAGTTCCTTTGTCCGATATTGTTTGTAACTAAGTGGTGGTTCTAAAATTTATCTCCTGAGTGTTCTGTTTAAAGTAATTAAATACTATTGATTAGTCTTTCAATTCCTGTGCTGTGCGCATTCTCTACAACACCCATGTTACAAATACCTGTTTCTGGTGTTGTGTAAAAGGATTAGTGTAAACTTTTTGTAAAAAGAATTGTGGTTTACATTACATCATGCAATGTCAAGTCAAGCATATTGCATTGTGAGATATAATATTCTGTACATTTTGGGTGATAAATTTAGACAAATAACTTTTTGTCTTCTCCTAAAGAATAATGACACCTACACCATGCAAACTATCAAGTAATGTTAATGTTAACCCATAGCCAAATATTTAGTCATTGTTTTAGGCTACTGTTGAAAATAATCTATTTCTAAATCTTAGGTTTCTTGATTATCCATACATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCATTTTAAAATGTGAGAGACATTGGGCTTTTGAGGAACGTTTATTTGTTCATCTCCCAATTATCATTGCATTACATCCTTTGTTTTCCCCCGACAATGAAAACAGAGCAAAGCATTAAAATATCATCTTACTAAGACATATTACTGTGAGGTAGATATAGAGTTAAAACCATGAATATGCAAATTAGTCCCCACCTCCACTCTATCACACAGGACTACCTGACCCACTCGATCAGCTGTAGTAAATGCTATACAATGGCAAGTGGAAATATTGGTTTAATTCATCCATATGTGTTTGAAACAGAAACTAATTGAGAAGAAGAAGAGAAAGAGCAAATCAGGGTCACCTACAAGTTGATGTATCAGAATGGTAATGTGTTTAAGTATTGCTCTCTACAACATCAGACATATGATTACCCTTTGGCATTATCAAACAGCTAATAATGTGTTGCTAACATTACACAAACCATGTTCCCATTTGTCATGAGTCAGACAGCTGCCTTCTAAAAATCAGCATGCTTAGAAATACTTTGAACATCATAGAAAGTCCCAAAAGCCCCGCCCCGCACGTTGATGGGATTGGTTACATGTTTGACGGAAGGAAACGGGCAAAGTACGTTTTTGACTGCAGTTTTAAGGAGAAAATACTCAGCAATGGTATTGACTGATGAATTCGCACATGGTTTGTCTTAAAGCATATTAAAAACACCACGTAGACATATAAACAACATTAAAAACTTGATTTTCACCACAGGGAGTCTTTAACTCCATTGGTGACATAATCTGGTGGCCCTAAAATGAAGCTTCACTCTACTTCATCTGACCTGATGGTATATTTCAAAGGAAATACTGCAGCAGAGGTGACGACATGTCAACGGTGCTCGAGAAACCCCCTCGTATGCATAGCGTCTCATTGTGAGTTCCTGCTGCCCGTGCGAGATTTGAGACGACAGAACACGAGTACAAGGTTTTCCTTTAAGTTAATATACTTCAGATTTGTTATAGCTTTACCATGGGATCATTTGCACAGAGGGGATGATCAACCCGAATGTCAAAGAAAGTCTCCAAATCAGGCACTGGATCTGAGGCTTCCAGATGATGTTTCACCTCCCCGAAGAGCAGATGTCTTGGCAGTTGCATCTTCACGCCCAAAAAGTTTGGTTTTTATGGGTCACATGTACAGCATGATCTTTTGCATCGTAACAGATGGCTTCCCTGAACACCGTCCTCCTCTCAAATACGTCTGCAGCTATTTGGATGGAGATCCCAAAAGCCCACTCATCCAAATGGAAGTTGCTGCAACCATATTTCCAGGCCAGGCGCTGATATATTTTTCTCGGCGGAGGGCGCCTGGGTCCGCACATCCATCACGCAGTGGCTATTTTCAGGGCGGCCGCACTCCTCGATCATTCTCCCGTAGTAATGCGAGTCAGAAGACATCAGTGGGTGTAATGGCGTGCTCCAGTTGGCCCCCACCATCCCGCGCCTCTCGCAGATGCGCTCTGGCACTAAAGGGACGACACAGATACGCTTACATCTTTTACGATGATGTCGTTCTTCTGTTCGACATCTGTGTTACGACCCTCTTCCGGGCTGCAGAGAGAGTCCGAAGTCATCCGTGCCCACTTCCCTGAAATTGTACTACGTGAATTATTGCTAACATATACTTCACTGTTGGCATCAAATGCTGGCATTTCTTTGAAAGAGGGGGCAAAATGCCATTCCAGGAGAAAAAAAAAGAGACTCTGCCCGAAAAGAGCGATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464925 lncRNA downstream 10929 1211707 ~ 1211930 (-) True G404493
TU464918 lncRNA downstream 22188 1199357 ~ 1200671 (-) True G404486
TU464916 lncRNA downstream 24618 1197441 ~ 1198241 (-) True G404484
TU464878 lncRNA downstream 75132 1147456 ~ 1147727 (-) True G404457
TU464800 lncRNA downstream 91597 1131043 ~ 1131262 (-) True G404380
TU464973 lncRNA upstream 39228 1309554 ~ 1309772 (-) True G404541
TU465037 lncRNA upstream 133588 1403914 ~ 1404355 (-) True G404604
TU465103 lncRNA upstream 196515 1466841 ~ 1500623 (-) True G404669
TU465212 lncRNA upstream 333974 1604300 ~ 1604628 (-) True G404771
TU465213 lncRNA upstream 334384 1604710 ~ 1605108 (-) True G404772
CI01000299_01114487_01122666.mRNA mRNA downstream 98629 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01057889_01063623.mRNA mRNA downstream 159236 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01003547_01034507.mRNA mRNA downstream 188047 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_00670925_00672195.mRNA mRNA downstream 549234 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_00452374_00452868.mRNA mRNA downstream 769991 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_01338052_01368900.mRNA mRNA upstream 67546 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01419938_01421048.mRNA mRNA upstream 149203 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01693958_01696561.mRNA mRNA upstream 422598 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_02670695_02682116.mRNA mRNA upstream 1400270 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_02723315_02728716.mRNA mRNA upstream 1452894 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
TU464792 other downstream 146968 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 550003 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465225 other upstream 389329 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 585313 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 747361 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 2870792 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 3205668 4475994 ~ 4550721 (-) True G407413

Expression Profile