RNA id: CI01000299_01693958_01696561.mRNA


Basic Information

Item Value
RNA id CI01000299_01693958_01696561.mRNA
length 4382
RNA type mRNA
GC content 0.43
exon number 1
gene id CI01000299_01693958_01696561
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1692924 ~ 1697305 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGTGACACTGATGTGTAGATTTGCTCATCTGTCTCGTTCAACGGCAGATTTTCAAGTTGGAAACCATGGAGATGTCGATTTGCTCAGTGCAAGAGAAACTGGCTTTACGTTTAGCCTCTTTGAATTGAGATGCCGCCGGATAATATGTTGGAAATGCATTCCCAAATTGCGCATTGGAGAGTAATTGTGCCAGTCGATGTTCATTTAAATTTCAAAGGAGCGTTAACGTTTTCTCCTTTTTCCCTCTTCGTTCTCCCCTCTATGTCTTCGTTTAATGTGCCATGATGAAAATATTGTGGTTGTATTTGAAATATCATGAGCATTACATAATATACATGATGTATTGTATTGAATAAATCAATGCATTTGATAGATATCGTTGATAGAGTTTGGTATGAGACTATTCTGATATTATTTAGATAGCCTACAGTTATATCGAATCCATTTATTACCTCTTGCATTGCAAAGTTTAGGCTAAAGAACAGTGCACGCTGGCTATGCAATTCAGCATCTGCTTTTGCATTAAGTAGGAACAGTTTGCTTTACATTAATTGGAAGGATCCTGCGATTTGTTTTTGAGATTTTCCTGTAACATCTTGTGATTGTCCACCATTTAATGTAGTTTGCAGATGTAGATATTGATTGTTCATGTAACAGACATTCATCACATCTTTTCCTTTTCTAGATGACACCCCAAACTACAACTGCACTACCGTGAGCTGGGCCATTCCTGCACAAGAAAATGCATATCTGGATACTGAAAATAATATTGCTGGTTGCCACATCTCTGAGTCTGGTTGAGATGTATGACAATTATGGGGAGATCTGTAGGAATCTGTGCACTTGCGAGGAGAAGGAAGGCATTCTTACGGTCAGTTGTGAGAACAGGGGCATTGTGCGACTGTCGGAAATAAGCCCGGTGCAATTTTCTATGTACCATCTTTTACTGACAGGTAATTTGCTAAAAAGATTGTCTGTCAATGACTTCATCAACTATACTGGAGTTACCATTTTGCATTTAGGTAATAATGATATATCTGAGGTGGAGACTGGGGCGTTCAATGGACTCCAGGGATTAAAGAGATTACATTTGAACAATAACAAAATAGACATTCTTAGGGACGACACTTTCGTCGGACTCGAGAGCCTAGAATACCTGCAGATTGATTATAATTTTATTAGCACTATTGAACCGAATGCTCTGAGCAGGCTTCATCAAATGACTGTGCTGATTCTCAATGACAACTTGTTGTCCTCTCTGCCCACAAACATTTTCCGGAATGTGCCCCTGACGCACCTGGATCTTAGGGGAAATCGCTTAAAAATGTTCCCTTACATCGGCCTTTTGGAGCATATGGACAAAGTAGTGGAATTACAGCTTGAGGAAAATCCATGGAATTGCTCTTGCGAGCTCATTGCGCTCAAGGCTTGGCTGGAGAGCATCGCCTACACTGCTCTGGTGGGGGAGGTGGTTTGTGAGACTCCTTTCAGGCTCCATGGCAGAGATCTGGACGAGGTCTCAAAGCAGGAACTGTGTCCCAGAAGGGCCATATCAGAGTACGAGATGCGCCCTCCTCCCCCGCTCAGCACCAGCAGCTATTTCCAGACTACGCCAGCGGCTGTGACGGCATCAGCCACGTCTTCGGCCGTCCTGCGATCCTCATCTAGGCCGACCAAGGGCACCCGCCAATCCAGCAAAACCAAGTCCAAGCCCACTTCTCGAATCCCAGCCAACCCCTACAACTACGGGCCCATCATTGCTTTTCAGACCAAATCTCCCGTGCCTTTGGATTGCCCCACCACCTGTACATGCAATCTGCAAATCTCTGACCTGGGGCTAAACGTCAACTGCCAGGAAAGGAAGATCGAAAACATATCAGATCTTAAGCCCAAGCCATACAATCCTAAAAAGATGTACCTCACGGGGAACTACATCCCCGTCGTACGTAGATCTGACTTCGTGGAGGCTGAGGGACTGGATTTATTGCACCTGGGAAACAATCGGATAGCACTCATACACGACAGAGCCTTTGGGGATTTAATTAACCTACGTAGGCTGTACTTGAATGGCAATTTGATTGACAGACTCACAGCAGATATGTTCTTTGGGCTAAAGAGTCTGCAGTACTTGTATTTAGAATATAATAAGATTCGAGAGATTGTAGGAGGCACCTTCCGCTTTGTGCCCAACCTTCAGCTACTTTTCCTCAATAACAATCTTTTAAAAACGTTGCCAGGAGGCATCTTCTCTAGTCTGTCTCTCTCCCGCCTCAACCTTCGCAGCAACCAATTTCAAAACCTGCCTGTGAGTGGAGTTCTGGACCAGCTGAAAGCATTGGTTCAGATTGACCTGTTCGAGAACCCTTGGGATTGCACCTGCGACGTGGTTGGCATGAAGATCTGGTTGGAGCAGCTGAACACCGGAACGGTGGTGAACGACGTCAAATGCGTGACACCCAAGCGGCTTGCAGGGCAGGATATGCGGGTTGTCCCTTCTGAGCAGTTATGTCCAGATTACTCTGACATCATCGTGTCCACTGTGGTTCCTTCTGAGGAGCCTTCAGCAGACAGGATCACCACCACCGAGACACCCCAGAGGTTTAACACCACTTCCAGTAATGTTCCTTTGTCTGTTCTGATTCTCAGCCTGCTCCTTGTTTTCATAATGTCCGTGTTTGTGGCAGCCGGCCTGTTTGTGGTGGTGATGAAGAGGCGTAAAAAGTCTCAGAGCGACCGTACCAGCACAAACAACTCGGACGTGAGCTCCTTCAACCTGCAGTACAATCTCTATAGCAATCGCTCTGTCCCCAAGGTCAAGGCCCCAGCGGGTCACGTCTATGAGTACATTCCCCATCCATTAGGTCACATGTGCAAAAATCCAATCTACAGGTCCCGGGAAGGGAACGCTGTGGAGGATTACCCCGATCTGCACGAACTCAAGGTCACCTACAGGAGTAATGCTGACGAGGACCAGGAGGTCACCTTGAGGAGCCCCAATTACACGGTGAGCACCATCGAGCCTCGTGAGCAGCCGTCTCCTGTTCAGGATGCAGAACACTTCTTCAGAGGGATTCTTGAGCCGGATAAATCTCCATCGACTGCTGGCAGCAGGTTTGAATATAAGTACACTGGCCCCGTCCCGTACACATACCAACCAAACTTCGATGTTAGGCGCCAGTTCTTACATCCTGAAGGAATACGAGAGACTATGCTATATGGTCCAGCGCCAAGTACTGTCTATGTGGAGCCCAATAGAAATGACTATTTGGAACTAAAGGCAAAACTTCAAATAGAGCCGGACTACCTCGAAGTTCTTGAGAAACAGACAACACAGAGTCAGTTTTAAGTCTTGGTCTATCTATAAATGCAGTAGAAGCATTTCCCCCCTTATACTGACTCAAACTGGAGGGTGCCTTGGCACAATATACACCAACTTAAAGAAAAAAAAAAAATCCAAAACCTTCAGTGGGGTGTGCCGAACTATGTTACTTTAATTTCAGAACCACATGGCATTACAGAAATAACTAAGAATGAAAATAAATAAATAAATAAATAGAGCTCGCTGAACTTTGATGAAAGCACGAGTTGTGATATAAAACTGGCGATGCAAAATCTATTTTTTTAAGTCGATGATTGAATACGCATAAATCTAACTGTACAGGTTAATCTCACCCAAATACATTTTCAGGAATATAATCATACAAATATTGTGAATTTAAAGGGGTTGGGGAGGGGGTTCACATTCAAGAACAAAAGAGAAAAAAAAAACTTTCTGACAGAAACACTATACAGCAGCGCATCCAATCAAGCAGGACAATTTCTCTGCTTTAGTCTGTAAGTAAGTACTGTATTTATTGGTATACTCTTTGCCATGTATTTTCAACATTTTTTCAATGCTCATCAATATTATGTGTGTCATGTCCCATGATTCTCTGTACGAACATTTTGTTTGTAGTTTCCGATCACTTACTGTAGCTTGCATTGTACAAGTGGCTTTTTTTGAGCAGTGGCACACCCCAATGTCGAAGAGAGACTTTGCATCATTTAACGATTTCAAAAGGAAAAGTGTCTTTGTATGCTGTCTGCACTTTTTTGGAAGATGGAAGGCCACAGGGTCTTCCCAGCTAACATTAGAAGAAATATTATATATTAAAAATGAATATGTGTATTCATTCTTAATATGTATTTTTAATATGTTATATCAAAAATTCATAAATAATAATTGAAGTAATAATTATGTTGTGTAATACTGATATTTTAATGTAACACCTATTTTTATACAAGCATTCGCAATTCTCTTTCCCTTATCGTTTTCATTGTTTTGATTGCTTTGCACTTATTGCACTATATTGACCAAAATATGTTTATGTCATCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465205 lncRNA downstream 1643 1686047 ~ 1691281 (-) True G404765
TU465219 lncRNA downstream 56967 1635677 ~ 1635957 (-) True G404778
TU465218 lncRNA downstream 60588 1631896 ~ 1632336 (-) True G404777
TU465213 lncRNA downstream 87816 1604710 ~ 1605108 (-) True G404772
TU465212 lncRNA downstream 88296 1604300 ~ 1604628 (-) True G404771
TU465241 lncRNA upstream 8722 1706027 ~ 1706240 (-) True G404800
TU465505 lncRNA upstream 308871 2006176 ~ 2006729 (-) True G405049
TU465507 lncRNA upstream 319779 2017084 ~ 2017314 (-) True G405051
TU465523 lncRNA upstream 332300 2029605 ~ 2030051 (-) True G405067
TU465524 lncRNA upstream 332896 2030201 ~ 2030437 (-) True G405068
CI01000299_01419938_01421048.mRNA mRNA downstream 271876 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 323548 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 422598 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01114487_01122666.mRNA mRNA downstream 568694 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01057889_01063623.mRNA mRNA downstream 629301 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_02670695_02682116.mRNA mRNA upstream 973291 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_02723315_02728716.mRNA mRNA upstream 1025915 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02761916_02788258.mRNA mRNA upstream 1064109 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 1135785 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02850281_02876863.mRNA mRNA upstream 1152976 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
TU465225 other downstream 32924 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 617033 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 1020068 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465428 other upstream 158334 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 320382 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 2443813 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 2778689 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 3228663 4925968 ~ 4928818 (-) True G407509

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017668 True 2640 mRNA 0.48 2 NC_007126.7 3089212 ~ 3096150 (-)
tiger barb (Puntius tetrazona) TU1118 True 3978 TUCP 0.48 2 NC_056699.1 3636707 ~ 3699093 (+)