RNA id: CI01000299_02670695_02682116.mRNA



Basic Information


Item Value
RNA id CI01000299_02670695_02682116.mRNA
length 1049
RNA type mRNA
GC content 0.48
exon number 9
gene id CI01000299_02670695_02682116
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2670596 ~ 2682116 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTTAGTCATAACACAGATAAGATGTACCATTTATCTCCAGTCTGATATAGTTCTTCTAACAGACCATTGCAAACCACTTGAGATGCTTGCTTTGTCCCTGAGGATAGCAGAGTTGAACCTTAGAGCGTTGACCTTTGCAAAGACTTTGTGGCTCTCAGCCGTGTCGGGAGGCCTTGGATATTATCAGTTGCACAATGAGGACGACCCCTCCGAAGGGGCCGCCGGCGCCGAGCCGTCCACATCCTCCCAGGCCACTGCCGCTGTGTTAGGCATCAGCAACCCCGTGGTGGATACAGAAGCTCCGCCTCCTCCTTATGCTAGTGTGGCGCTCGGAGCTACCGCTGCACCAGAAAGCACATTTCCGGGGGAATTTCCCGTTCCTCCACCATACAGCGTTGCCACGTCTCTGCCCACTTACGATGAGGCAGAGAAGGCTAAAGCAGCAGCCATGGCTGCCTCGGCGGTGGAGAACAAAACTCCAAGTCCTCGATTCGCACAACTTTCCACTGCAGCTTTGGTAGAGTCCAAATCATTCCCTCAAAGGAAAGATGCTGTAGTAGTGCTGGATGAGGATTTTCCGGTTCGGGATGACTTCAGTGACGCTGATCAGCTGAGGGTGGGAAATGATGGAATCTTCATGCTGGCCTTCTTCATGGCTTTTCTTTTCAACTGGATCGGGTTTTGCTTGTCTTTCTGTTTGACCAACACCATTGCTGGCCGATATGGTGCCATCTGCGGCTTTGGCCTCTCTCTCATCAAGTGGATCCTCATTGTGAGGTTTTCAGATTACTTTACTGGATACTTCAATGGGCAGTACTGGCTCTGGTGGATTTTCCTCGTTCTTGGACTCCTGCTGTTCTTCAGAGGGTTTGTGAACTACCTAAAAGTGCGTAACATGTCAGAAAGCATGGTGTCTTCACTCCGAACTCGCTTCTTCCTCCTCTATTAAAGGTGAGGATATTGTTAAACAAACACATACACATATACACACACAAATGACAGTGTAATTATTTAGGTTTGATTTTATTCATTATGATTGATTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU467344 lncRNA downstream 138588 2531792 ~ 2532008 (-) True G406715
TU467152 lncRNA downstream 575240 2095043 ~ 2095356 (-) True G406551
TU467140 lncRNA downstream 612710 2057670 ~ 2057886 (-) True G406539
TU465524 lncRNA downstream 640159 2030201 ~ 2030437 (-) True G405068
TU465523 lncRNA downstream 640545 2029605 ~ 2030051 (-) True G405067
TU467243 lncRNA upstream 23405 2705521 ~ 2706692 (-) True G406630
TU467401 lncRNA upstream 38097 2720213 ~ 2720548 (-) True G406772
TU467410 lncRNA upstream 147101 2829217 ~ 2829455 (-) True G406779
TU467418 lncRNA upstream 239194 2921310 ~ 2922385 (-) True G406786
TU467422 lncRNA upstream 247224 2929340 ~ 2929549 (-) True G406790
CI01000299_01693958_01696561.mRNA mRNA downstream 973291 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_01419938_01421048.mRNA mRNA downstream 1249548 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 1301220 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 1400270 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01114487_01122666.mRNA mRNA downstream 1546366 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_02723315_02728716.mRNA mRNA upstream 41104 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02761916_02788258.mRNA mRNA upstream 79298 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 150974 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02850281_02876863.mRNA mRNA upstream 168165 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02891830_02905146.mRNA mRNA upstream 209458 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
TU465509 other downstream 652546 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 789608 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1010596 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 1594705 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 1997740 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 1459002 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1793878 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 2243852 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2759221 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 3136453 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001524 False 5436 mRNA 0.42 8 NC_007112.7 5354489 ~ 5394752 (-)