RNA id: CI01000299_02723315_02728716.mRNA


Basic Information

Item Value
RNA id CI01000299_02723315_02728716.mRNA
length 1098
RNA type mRNA
GC content 0.55
exon number 3
gene id CI01000299_02723315_02728716
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2723220 ~ 2728753 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGCTATCCAACTCCAAACAACCTAGAAGCGTCGCAATGGAAAAATCAAAGAACTTCAGGATCGACGCTCTTCTGGCTGAAGAACCCCATCGAGGGACACGAGAAGTATCACCTGGACTGAGCAGCGACAGCCCGACGGGTAGCCCGGTGTCCTGCAGGCGCGCCGACACTCCGTCCCCCCGCGGGACCCCCGGCGCCATACACCTCCAAACCGGAATCATACCTAAACCAGGGCTGCTCAATCTCCCACACCCGGGACTCACTTCAATTCCAGCCATGTACACGACGCCCATGTACCCCATTTCAGCTTTGGGAGGTCAGCACCCTGCCCTGGCGTACTCGGGCTTTACGCAGCTGACGCAGCCGTACCCGGAGCACCTGAAGGCGGCGGCGATGGCCGGATCTTTACCGCTGGAGCACTGGATACGAGCTGGCATCATGGTACCACGACTGCCCGATTACACCTCCGCCCCCCAGTCCGGTTTGATGGGTAAATGTCGTCGGCCACGGACAGCATTCACCAGTCAACAACTACTGGAGCTGGAAAACCAGTTTAAACTGAACAAGTACCTTTCCAGGCCCAAACGCTTCGAAGTGGCTACATCTCTCATGCTGACTGAGACACAGGTCAAGATCTGGTTCCAGAACCGGCGAATGAAGTGGAAACGCAGTCGCAAGGCTAAAGAACAGGCCGCGCAGGTCGAGGTTGAACGCCAACGTGGCGGGACCAAATCGACCAATGAGAGGCCAGGAAGGGACGGCCGCAGGGCTCACGCTCAGAGTGTGGAGGAGCACGAGGAAGAGGACGATCTTGACGAGGACGATGAAGAAGATGAGGAGGAAGGGCCACACAAGTTTATAAACGACAACCTAAATATACCACGTTCCACAGACTTTCTGCACCACACATCTGCGTTAGGATACCACGCTGACAGCCCGTTCTCTGAGGACGACATGGAGGAGGTGGGAGCCGGCGATAGGAAGATTGGGGCAGGGTTATGAAAAGATTTCCAAATGGAAACTGAGACTGCATGAACTCACAGCAGCATTACAGTCCTGTGCTGTGGTTTGACTATGGCAACAGTAAGATGAAAAAA

Function

GO:

id name namespace
GO:0021520 spinal cord motor neuron cell fate specification biological_process

KEGG:

id description
K08025 HLXB9, HB9; homeobox protein HB9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467401 lncRNA downstream 2672 2720213 ~ 2720548 (-) True G406772
TU467243 lncRNA downstream 16528 2705521 ~ 2706692 (-) True G406630
TU467344 lncRNA downstream 191212 2531792 ~ 2532008 (-) True G406715
TU467152 lncRNA downstream 627864 2095043 ~ 2095356 (-) True G406551
TU467140 lncRNA downstream 665334 2057670 ~ 2057886 (-) True G406539
TU467410 lncRNA upstream 100464 2829217 ~ 2829455 (-) True G406779
TU467418 lncRNA upstream 192557 2921310 ~ 2922385 (-) True G406786
TU467422 lncRNA upstream 200587 2929340 ~ 2929549 (-) True G406790
TU467475 lncRNA upstream 328953 3057706 ~ 3058006 (-) True G406842
TU467504 lncRNA upstream 392244 3120997 ~ 3121253 (-) True G406868
CI01000299_02670695_02682116.mRNA mRNA downstream 41104 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_01693958_01696561.mRNA mRNA downstream 1025915 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_01419938_01421048.mRNA mRNA downstream 1302172 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 1353844 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 1452894 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_02761916_02788258.mRNA mRNA upstream 32661 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 104337 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02850281_02876863.mRNA mRNA upstream 121528 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02891830_02905146.mRNA mRNA upstream 162821 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02951402_03057288.mRNA mRNA upstream 222649 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
TU465509 other downstream 705170 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 842232 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1063220 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 1647329 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2050364 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 1412365 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1747241 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 2197215 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2712584 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 3089816 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001527 True 1031 mRNA 0.56 3 NC_007112.7 5449870 ~ 5455498 (-)
bowfin (Amia calva) AMCG00001314 True 849 mRNA 0.60 3 CM030137.1 24568365 ~ 24576371 (+)