RNA id: CI01000299_02833341_02845817.mRNA



Basic Information


Item Value
RNA id CI01000299_02833341_02845817.mRNA
length 1858
RNA type mRNA
GC content 0.46
exon number 9
gene id CI01000299_02833341_02845817
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2833090 ~ 2845870 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTCCCTAATGAGTGGCTCAGTCATGCTCCGTGGCTGAATATAGCATAACAAGATGTCTGCCTGTGCCGGGTTCTGCTCAGATGGCAGCATTGCATCAGAGACTCAGGGGGGAGCCCTACCTGGCAAGAGTGAGCCAACAATAGATACCCTGTCAGTACCGGCTGTTTTGCCCAACTGGTATTACATAATGGCTGGTGGAGGAGCCATCTTGTTCCTGGTTATTGTCATTGTCATGGCCGTTAGCTGTCGCCATCTTACGGCCAGGAGGAACCAACCCACAATGGCCTACTACAGCCCACACAGTGCACATTACCCAAACGGCGGCGTGCACAGGTCTGGGTATCTAGGTTATTCCTTTGTATCTCGCATTTCTCACATTTTTTTCCCCAAAGATCCCCAAAACTGCGTTGGCGTGTGTTATTCTGAGCAAACGCTTGCTGGTGTTGAGGCTCCAAAAACAAGTCCCATAAACAAAGACAGCTGTTTCCTTTCTCCGACGTTTCCATGTGATGAGGAAGCACTGAGCGCTGGGGTGGGAGAGAACTTTGTGCAGATATCAACACCTGTTAAAAAGCCAACGGTTGGAAATGGGCGTCTCTTTAATGGGAAAGACCATATAAATGCAGGTTTCCAGTTTCCAGAGTGGAGCACAGCCGAAACGCCATCAGAGCCTCCGGTGACACATGTGGTCGATAAGGACAACGCATGGCTGTACTCTCTGGACCCCATTCTCCTGACCATCATCGTCATGAGCTCTCTGGGTGTTCTTCTAGGTGCCGTGTGTGCCGGCCTCCTCCTTTACTGCACCTGCTCATATGGCGGCTTGACGTCACGCTCGTCCACCACCTTGGAGAACTACAACTTTGAGTTGTACGACGGGATTAAGCACAAAAGACGAGCCTCATCTCTTAGTATTCCTGGAATGCATGTCCATCTCAGCTGGAGAGCTCCTAGACCGAACTTCTCCTGGAGCTTATTTTCCAAGCAGTCATGCTTACTCAGCTCTAGCGCTGCTGCCAAGGACTTCCTCGTCTTTCACTGGATTACATCAAAAATGGAGCATTTGAGAAGTTCAGTAGCCCAGGATGATTATACGTCATCATTATTGTGTGTTTACAACCCATTGCTTTCAGCCCACCATTTTGTGTTTCTCTTGTCAGTTTGGAAATGGAAAAGTTTTATGTTAACAGGAGACAGGTTTGGTTGTAAATCTGCTCCCCTGTGGTTTTCAAAGACTGGCAAAAGGTGGAAGACAGATGCCGTAAATCTTTACTTACTTGCTCAGATGGGATTCCTCACCTTCATTCATGCTCAAAAACAGATTGTTGGACTACGTCTGCTACAGTTTCTCTCATCTCCCCATGGGCTCCCATTAGCACGGACCTTCAGTCGCCTTCATTTAGGGGCTCACAACATCAAAGCTTTGAAGTGCCTAACTGTTCCACCCCCTAAAGTTCCCTTCATCCCTCCACCTCATCCAACCACCCAGTTGCATCCATTTAACTATTTCTCTACCTCAGCTTTCTCTCTGCTCCATAGTGTGCCTGCCTTTGCCTTTACCACTGTGGCTTTTTCACTGACTAATGATGTGTACAGTAAGATCTAGTAAGGTCGATCGAATCAGCCTTGTTCGAGATCCCAAGAAAATCAAAGACATTATTATGGCAGGCAAATAAAATATTGAATAGACTTTAAAAAAAAACACCATCAAACATAAACCTATAACTGTCCTACAGCCATCCGTTTTACAATCAGGTTTGTCCATCTGAAACTATTTTAAGTTTTTCTTCAGTATCATAAGAACCACGTAAAAAAACTGAAATACTCATTGCCGTTCTTTCATCTTAAATGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU467410 lncRNA downstream 3635 2829217 ~ 2829455 (-) True G406779
TU467401 lncRNA downstream 112542 2720213 ~ 2720548 (-) True G406772
TU467243 lncRNA downstream 126398 2705521 ~ 2706692 (-) True G406630
TU467344 lncRNA downstream 301082 2531792 ~ 2532008 (-) True G406715
TU467152 lncRNA downstream 737734 2095043 ~ 2095356 (-) True G406551
TU467418 lncRNA upstream 75440 2921310 ~ 2922385 (-) True G406786
TU467422 lncRNA upstream 83470 2929340 ~ 2929549 (-) True G406790
TU467475 lncRNA upstream 211836 3057706 ~ 3058006 (-) True G406842
TU467504 lncRNA upstream 275127 3120997 ~ 3121253 (-) True G406868
TU467520 lncRNA upstream 308730 3154600 ~ 3155118 (-) True G406884
CI01000299_02761916_02788258.mRNA mRNA downstream 44653 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02723315_02728716.mRNA mRNA downstream 104337 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02670695_02682116.mRNA mRNA downstream 150974 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_01693958_01696561.mRNA mRNA downstream 1135785 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_01419938_01421048.mRNA mRNA downstream 1412042 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_02850281_02876863.mRNA mRNA upstream 4411 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02891830_02905146.mRNA mRNA upstream 45704 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02951402_03057288.mRNA mRNA upstream 105532 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_03104921_03106385.mRNA mRNA upstream 258735 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_03206204_03214303.mRNA mRNA upstream 360315 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
TU465509 other downstream 815040 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 952102 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1173090 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 1757199 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2160234 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 1295248 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1630124 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 2080098 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2595467 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2972699 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile