RNA id: CI01000299_02891830_02905146.mRNA


Basic Information

Item Value
RNA id CI01000299_02891830_02905146.mRNA
length 714
RNA type mRNA
GC content 0.51
exon number 3
gene id CI01000299_02891830_02905146
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2891574 ~ 2905146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGAGACATGTGGAGGCCACCTGGATGCCAGCGATGCTGGTTACATCACATCTCCAGGATATCCCCTGGAATACCCGCCCCATCAGAGCTGCCAGTGGGTGATCAGCGCACCTGAACCCTCACAGCGCATCGTGCTCAACTTCAACCCCCACTTTGAGCTGGAACGACTGGATTGCAGGTATGACTTCATAGAGATCCGAGATGGGAATTCTGAGTCTGCGGACCTGCTGGGAAAGCACTGCAGTAACATCGCTCCTCCTGCCATCATTTCCTCCGGTCCCGTCATCCACATCAAGTTCGTGTCTGATTATGCGCACCAGGGTGCTGGATTCTCCCTGCGCTACGAGATCTACAAGACTGATGTGAAGACAAGCAACACATTTCCTTTAGCTGTTTGCTTTCGTCACTCAGTGGTCTCGGCGTTTATGTGTGAAGTCTCACTTGGTCTTGCCCCTTGATTGATGGTTGATTGGAGCAAGCTGGTTTTTGAGGGTCACGAGTGGCTCAGGTTGATTTTTGCGGTGCTCTTGTTACGCTGTAAATCTCGTTAGCGGAATGACCTCCTGCGACCTTTAACTCGCGGTTCCAGAAGGTCACGGCTCCTCCGTCCTGCTGCAAGGCCGTCAGACACGCTGATTCGTAAATGTTCCCTCAAAGTTTCCGAAATGCTCCCAGACCAATTAAACATCAAGGGAGAGAAGAAAAGAAAATAAA

Function

GO:

id name namespace
GO:0001570 vasculogenesis biological_process

KEGG:

id description
K06819 NRP2; neuropilin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467410 lncRNA downstream 62119 2829217 ~ 2829455 (-) True G406779
TU467401 lncRNA downstream 171026 2720213 ~ 2720548 (-) True G406772
TU467243 lncRNA downstream 184882 2705521 ~ 2706692 (-) True G406630
TU467344 lncRNA downstream 359566 2531792 ~ 2532008 (-) True G406715
TU467152 lncRNA downstream 796218 2095043 ~ 2095356 (-) True G406551
TU467418 lncRNA upstream 16164 2921310 ~ 2922385 (-) True G406786
TU467422 lncRNA upstream 24194 2929340 ~ 2929549 (-) True G406790
TU467475 lncRNA upstream 152560 3057706 ~ 3058006 (-) True G406842
TU467504 lncRNA upstream 215851 3120997 ~ 3121253 (-) True G406868
TU467520 lncRNA upstream 249454 3154600 ~ 3155118 (-) True G406884
CI01000299_02850281_02876863.mRNA mRNA downstream 14711 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02833341_02845817.mRNA mRNA downstream 45704 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02761916_02788258.mRNA mRNA downstream 103137 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02723315_02728716.mRNA mRNA downstream 162821 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02670695_02682116.mRNA mRNA downstream 209458 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_02951402_03057288.mRNA mRNA upstream 46256 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_03104921_03106385.mRNA mRNA upstream 199459 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_03206204_03214303.mRNA mRNA upstream 301039 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03341031_03366645.mRNA mRNA upstream 435620 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03492360_03492614.mRNA mRNA upstream 587068 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
TU465509 other downstream 873524 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1010586 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1231574 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 1815683 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2218718 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 1235972 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1570848 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 2020822 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2536191 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2913423 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile