RNA id: CI01000299_03144958_03149338.mRNA


Basic Information

Item Value
RNA id CI01000299_03144958_03149338.mRNA
length 2202
RNA type mRNA
GC content 0.42
exon number 9
gene id CI01000299_03144958_03149338
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3144390 ~ 3149340 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAATAACTGCTTTTTTTTTACAGGATCATACTTCTAATATACATCACATTTATATATCGTATGATATATATTAAATACATTTTCTGGTGAAAACCCATGTTCAAAAATATAAATATATGTCTATATTTCAAATAAATGAATCTCATTTTTTTATGCAAGTATAAAAGTAAATTTTTTTTTAATATTAATACAAATTATATATCATATTTTAATTAAAAAAAAATTAAGGCAATGTTTTCTGATGAAACCAGTTCATTTTTTTTTTTTTTTTTTTCATAATGATGACAGTACTATTGTTAAATATAGTTTTAAATACATTTTAAATACATTTCCTCACGTTGTCATCATGTGATAAGATGAAAATATTAACATTGGGAAACTACTATGTGAATTTGTCAGCAGTAAAATAGAACTCTGCAGCATTTGATTGGCATGGGCTGGAGGGAAATTTAAAGGGGCGGAGTCAAATTTGAACCTGACCATTCCAACCAATCAACATTAAAGAGTGATAGGGAGTCGTTAAATCCTCTGAGCACTCAGAGGAATGTCTTGAGAGACCAACAATGGGAAGAAGTTCAGTGGTTATTGATTTTATAATTATAGTTTCATGTGGATTACTGTGTTGTGCTGAACAATTGAACTTATGGGAACAATCTTTAGACCAGGGCTCGAGTCAAAATGCCGTCTTCAGACAGCCAATGCCAGCGCAAGGGCCTGATCAAAGTGCGTTAGGCTTCGCACCCAACATGTTTCAAAACCTTATTGAATCCAGGGGACCTGCACCTGTAGCTCCTTGGAGACCTGCCCCAGCATTGGGGCAAGAGCTACCAATGCAAGCACAATCCCAGAGAACCAACTACGCACCTGTTCCCCTTCAACCTAGCCAGCCTTTGCGAAGCCAAGTGAATTTTGGACTAATAAAACCTGAGCAAACGGTTGAGACGTTCTCACAAACCCAACAGGGATTCCAGAAGCCCATTCCAGGTCCTGATCTCTATCCTGACCTCAAGGATGAGTTGGTTATGGGGCCAGAGTTTGTACCCAAGGTGCCAGAGCCAGCAAACACCGTGGAGGTTCATTGTGATGAGGTCTCTGTCAATGTGCAGGTGAAGCAAGATTTCTTGGGAAACAATCAGTTCATCAACCCCTCTGATCTGACGCTGGGTGGTTGTCCATCTGTTGGATTTGATGACCATGCCAGGATTGTTGCTTTTCAATCAGAGCTACAAGGATGTGGAAGCACACTAACGATGACTGAAGATTCACTTGTTTATTCCTTTGTTTTGGTGTATTCACCTTCACCTCTTCCTAACACGCCTATTGTGAAGACAAATGAAGCTATGGTTGCAATTCATTGCATCTACCCAAGGAAACACAATGTGAGTAGTAATGCATTGCATCCCAACTGGATTCCCTATGCTGCAGCGAGAGCTGGCGAAGAATATTTACACTTTTCCCTTAAGCTCATGACTGATGACTGGAGGTATGAGCGACCCTCTAACGCCTACTTTCTGGGAGATTTCATAAACCTGGAAGCCTCAGTGGTCCGTGCTAATCACGTTCCCCTGCGGGTGTTTGTGGAAAGCTGCGCAGCTACTTTGGGCCCCAGCGGGGAAACCACCACCGTCTACACGTTCATCGAGAACAGCGGATGCATGGTGGATGCCAAGCTGACAAATTCCAGATCCAAGTTCATGCCCAGGATGCAGGATGACAAGTTACAATTTCAGATAGAGGCATTCAGATTTAACCAAGATTCCCGTGGATTGATCTACATCACTTGTCATTTAAAGGCTACTACAACATCCAGTCCCATTGATATTATGAACAAGGCCTGCTCATTTGTTAAAGAAACAAACAGCTGGACTGCTGCAAACGGAGACAATCAGGTGTGTGGCTGTTGTGAGACCAGCTGTTCCATGAGAAAGGGCAGAAGTCTGGATTCTGATGATTCCATGTTGGAAGATGAGGCTACTATTGGGCCGATTATTGTCCAGGAGCCACAACCAATGGAGGAAGAGCCTTTACTGCAAATTGAAGAGTCTTCTCAGGTGTCATCGAAAGATGCAGAGTACTCCATCGAGTTGGTGCTCATGACTGCTTTGGTGGTCACCGTTGTAATCTTGTGTGTCATTATCCTTGGAACGTTGTTTTACCAAAGACGTCAGAAACTGCCTGTGCTGACTTGTGAATGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465895 lncRNA upstream 333718 2810452 ~ 2810672 (+) True G405407
TU465878 lncRNA upstream 413881 2730273 ~ 2730509 (+) True G405390
TU465873 lncRNA upstream 423066 2720862 ~ 2721324 (+) True G405385
TU465801 lncRNA upstream 429249 2659354 ~ 2715141 (+) True G405329
TU465854 lncRNA upstream 488977 2655180 ~ 2655413 (+) True G405366
TU466103 lncRNA downstream 59586 3208926 ~ 3209411 (+) True G405611
TU466111 lncRNA downstream 171184 3320524 ~ 3321012 (+) True G405618
TU466112 lncRNA downstream 171855 3321195 ~ 3321433 (+) True G405619
TU466114 lncRNA downstream 184887 3334227 ~ 3335205 (+) True G405621
TU466154 lncRNA downstream 257245 3406585 ~ 3406810 (+) True G405660
CI01000299_02813216_02818668.mRNA mRNA upstream 325294 2813141 ~ 2819096 (+) True CI01000299_02813216_02818668
CI01000299_02753238_02760499.mRNA mRNA upstream 383437 2753238 ~ 2760953 (+) True CI01000299_02753238_02760499
CI01000299_02706136_02711943.mRNA mRNA upstream 430650 2705873 ~ 2713740 (+) True CI01000299_02706136_02711943
CI01000299_02696797_02704180.mRNA mRNA upstream 440170 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
CI01000299_02612562_02613926.mRNA mRNA upstream 529598 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
CI01000299_03157191_03166687.mRNA mRNA downstream 7851 3157191 ~ 3166701 (+) True CI01000299_03157191_03166687
CI01000299_03170577_03174986.mRNA mRNA downstream 21237 3170577 ~ 3175003 (+) True CI01000299_03170577_03174986
CI01000299_03176677_03185710.mRNA mRNA downstream 27337 3176677 ~ 3186067 (+) True CI01000299_03176677_03185710
CI01000299_03189537_03200831.mRNA mRNA downstream 39979 3189319 ~ 3201406 (+) True CI01000299_03189537_03200831
CI01000299_03215678_03230586.mRNA mRNA downstream 66338 3215678 ~ 3230586 (+) True CI01000299_03215678_03230586
TU464370 other upstream 2538040 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2733602 364139 ~ 410788 (+) True G403609
TU463894 other upstream 3072119 35462 ~ 72271 (+) True G403578
TU466101 other downstream 5257 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 981918 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 1146193 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1340478 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 1553042 4702382 ~ 4702508 (+) True G405864

Expression Profile