RNA id: CI01000299_03206204_03214303.mRNA


Basic Information

Item Value
RNA id CI01000299_03206204_03214303.mRNA
length 1508
RNA type mRNA
GC content 0.46
exon number 9
gene id CI01000299_03206204_03214303
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3206185 ~ 3214303 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAATGCTCTCAAATGCATCCAACAGGGTCACAGGAAAAGCAGATTGTCCTCATTACGCAAAAGCTGAGCTTCTTGCTGATGTGCTGCAAAGAAACCTGCCAGATTTCCACATTCACAAGATCTGTGTTCACCCCAGTGAATGGAAGATATGGCTGGAGGACACCTGCGCATCAAATGGATGGACACATTCAAGCTCTCCTATAGTATGGAGGGAGCTGATTGATCGTGGGGGTAAAGGAATGCTGATCGGAGGCTTCAGTGATTTCCTTGAGCATGCTCAGGGTTACTATGGCATCACCTCAGATATGAACTCTGATCTGATGCTAAAAATTGCAGTAGAGAATCACCAAACTAAAGAGCTGTGTATGAAGGAGGAAGTCCACCGACACGTGTCTCTCAGACCTCTGCACATCTGGATCAGCAGTGCTCTGAACCCCATCTGCTACAGCCTCATCCCTCAGTTGTTCACCCCGGGACTGTTTCCAGGTCTCCCCCTTTTCAGCCTTCACCTCATGGACACCTGCGGCTCTGAGGAAATGTTACGAGGACTCAAGATGGAAACGGAAGACCTCGCCCTACCTCAGCTCCATGAGGTCACTGTCCATTCAGACCAGACACAGGCGTTTCAGGAAGCCCACTTCATCATCTTTCTGGATGACCTGCAGCCTATATGTGAAAGTAACGATGAGCCGGATGACAAGGACCACATGGTGAGCCGGGTTGCAGAATGTTTCTGTTGCTATGGGCAACTCATCGAGGCGAATGCACGGAAAGACGTACGAGTGATCGTGGCGGGAGACTCCTTTATTAATCTGAAGTGCTCGCTGTTAATTGAGAACGCACCCTCTGTTGACCCGCACAACTTTGTGGCGATGACAACGCAGCTGGAATGCGAGGCAAGAACTCAGCTTGCGCAGAAGTTGTCGGTAAAAACAGCAGACATGACTAATGTTATTGTATGGGGAAACATCAGTGGCAGTTACCATATTGACCTGCAGAGGGCGAAGGTTTTCAGATATGATGGCGCAATTTGGGGACCAGATGGTTTTTCTCAGCGAGTCATGGAAATGATTTATGATTGGAAATGGCTGGAGACAGATTTTATGACTTTAGTACATAAACATCGTGCCACAATTTCGTCAATGACCAACAAAGCCACAGCAATATCATCAACCAATGGAATAATGAGCATTTTAAGGGCCTGGAATAATGAATCTTCTCCAGAGGAAGTTTTCTCATTGGGTGTACTTAGTACAGGCAAGATCATTCAAATCATCCTCAAACATGAAATAAATATGGCTTACAGGCAGTTTGGGATTCCAGCAGGTTTGGTGTTTTCTATGCCTGTGAGCTTCAGGAATGGTCTCTGGTCAGTGCGGTCAGACATTACTGTTACAGATGAGTTGAGGGTAAAACTTGATGCTTGTGCTGATGAACTTAAAATGGTGGCCTCAACAAACTTCCAAAGGGGCTGGAGGATGTCCTAAAAGTATTTAAATTAATAAA

Function

GO:

id name namespace
GO:0004033 aldo-keto reductase (NADP) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467492 lncRNA downstream 1819 3158396 ~ 3204366 (-) True G406858
TU467498 lncRNA downstream 9186 3196293 ~ 3196999 (-) True G406862
TU467508 lncRNA downstream 30264 3174373 ~ 3175921 (-) True G406872
TU467526 lncRNA downstream 36930 3166531 ~ 3169255 (-) True G406889
TU467520 lncRNA downstream 51067 3154600 ~ 3155118 (-) True G406884
TU467554 lncRNA upstream 25006 3239309 ~ 3239848 (-) True G406912
TU467578 lncRNA upstream 75159 3289462 ~ 3295137 (-) True G406932
TU467588 lncRNA upstream 89449 3303752 ~ 3305190 (-) True G406942
TU467587 lncRNA upstream 98080 3312383 ~ 3316446 (-) True G406941
TU467571 lncRNA upstream 119740 3334043 ~ 3335207 (-) True G406927
CI01000299_03104921_03106385.mRNA mRNA downstream 99800 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 148897 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 301039 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02850281_02876863.mRNA mRNA downstream 329322 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02833341_02845817.mRNA mRNA downstream 360315 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_03341031_03366645.mRNA mRNA upstream 126463 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03492360_03492614.mRNA mRNA upstream 277911 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 920517 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 943698 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 956846 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
TU465509 other downstream 1188135 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1325197 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1546185 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2130294 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2533329 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 926815 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1261691 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1711665 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2227034 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2604266 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001539 False 910 lncRNA 0.49 5 NC_007112.7 6221552 ~ 6225273 (-)